Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2754 ATGATAATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTAAAAAGGTGTAAAATCGGTGACTCGGCGGGTGATCACGACGGCTACTCTGCGGCTCcgaagaagaggaagacgaaTGGGTATTACCCTTTAAATCTCCTCGGTGATGTCGCTGCTGGTGTAATTCCTGTGAACTTCCATGGCTTACTTAGCGCTGGTGTGTCTGAGAAAGCCTTTTCGGCATCGTGGTGCGCCGAAGTCTCGTGCTCAACTCCTGAAGTGGAGTCTAAGTCCGAGGTTGAAAACTCCGTCAGAGCAAAGATGAATCAGCCTGCGGAGGTTACGCGGCCGCCTTTGGTCAGGACATCTAGAGGTCGAGTTCAGGTACTCCCTTCACGTTTCAACGACTCAGTTATAGAGAATTGGAAGAAAGAGGAGAAGACTAGCTTGTGTGATTATAGTTTTGAGGATGAGGATGAAGATGAATATGAATgtagaaaggaaaaaattagtTCTAGGACACCAAAAGCAAACAATAAGAATTCGAAAAAAGGGAGAAAAGATGAGAACATTGGTTTTAAGTCCCGCAAATATTCGACATTGTGTCAACAGGAGACAAGAGAGGATGGGCGTGTAAGTTACAGTAATTTTAATATGAGAAGGTGCTCAACTTCCCGCAGTACACTTATCGCAAAGGGTgaacaattaattaaagatgAAAGACAACGATTtgtggaaatggaagtagatGAATTCACGGGCAATGAGATACATTTGAAGGAGAACGACCAGAAGAAAGGTAAAATATATGGAGCGGAAGACTTTTACGCTGGCGATATAGTGTGGGCCAAAGCAGGGAAGAAGGAACCCTTTTGGCCAGCCATTGTAATTGATCCAATGTCTCAGGCACCAGAGTTGGTCCTGAGGTCTTGTATTGCTGATGCAGCTTGTGTGATGTTTCTTGGGTACGCTGGGAATGAAAATCAAAGGGACTATGCGTGGGTGACGCGTGGGTTGATTTTTCCATTTATAGATTATGTAGACAGGTTTCAGGGGCAGTGTGAATTGTGTCACTATAGTTCATCTGATTTTGAAATGGCGATAGAAGAGGCCTTTCTGGCAGATCAAGGATTTACAGAGAAGTTGATGGAAGACATAAATATAGCATCTGGTAACACAGGTTATGATGAAACTGTCCTAAAGGGCCGTCAGCAGGCGCTACTTCCTGTTCAGCGGCTGTTGAAGTACTCATGCATCATATTTTGGGGACACTTGAGAAAAGCTAATAACCTAACTTCATTTGCTAAGGGAAATGGATTCTGGCACTACATGTTCCCTCTCGGACATGTTGGCCTAAGTCTGACTTGTAAATTTGACATACTGCTTTGCGTTGCTTATATAATTAAACTCCAATTTCCTTACTCCACAAATGCCAGAGTGTGGATTCGTACTGAGGTGCGCTGTGACGGATGTAAGGTGTGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGACACTGAATATTACTGCCCTTCTTGCAAAGCAAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAATGGAATAAAAACGGTGGGCAGCTAGTGCTACCAAACAAGGTCACAGTTGTCTGCAATGGTTTGGAAGGCATATATTTTCCGAGCCTTCACTTAGTTGTTTGCAAGTGTGGCTTTTGTGGGACAGAAAAGCAACCACTTAGTGAATGGGAACAACACACAGGTTCCAAATCAAGAAATTGGAGAAAAAGTGTTAGAGTGAAAGGCTCCATGCTGCCACTGGAACAATGGATGTTGCAGCTAGCAGAATTTCATGAAAATGCTCTAGTTTCTGTCAAACCTAGAAAACCTTCTTTAAAGGAGAGGAAGCGGAAGTTGCTTACCTTTTTGCAAGAGAAGTATGAACCTGTTTATGCTAAGTGGACAACAGAACGGTGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGatgTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTCCGAGATTTTACATCATGGGTTTGTAAACCTTGTGAAACACCTGACATCAAGCGGGAATGTTGTCTTTGTCCCGTAAAAGGTGGCGCTCTAAAGCCAACTGACGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTTGCTTTTGCTAGTGATGAGAAGATGGAGCCAGCGTTGGGTATTCTTAGTATTCCATCAAATTCGTTTGTGAAGATCTGTGTTATTTGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGCTCAACTTATTTTCATGCCATGTGTGCATCAAGGGCTGGGTATCGCATGGAGTTGCATTGTTTGAAGAAAAATGGTAGACAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCTAATCCAGACACTGTCTTGGTTATGCAAACCCCACTTGGGGTTATTTCTACCAAAAGCCTTcaccaaaataagaaaaaaactgGGTCAAGGTTAATCTCGTGTAACAGAACAAAGCTAGAAGAAACTCCAGAAGATAACACTGAGCACGACCCCTTCTCTGCTGCTAGGTGTCGTGTCTTTCAAAGAACAAATCATACCAAAAAGAGGGCAGCAGATGAAGCGATTCCTCATCATGTGAAGGGTCACTACCATCATTCTTTAAATACAATACAGAGTTTAAATGCAAACAgaGTGCTTGAGAAGCCTCAgacattttcttcttttagggAACGTCTTTATCACTTGCAGAAAACCGAAAACGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGTCTCTTTGCTCGTATAAATATTCAAGAAGGAGACATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGTAGCGTTGCAGATCTGAGGGAAGCACGCTATAGATTAGAAGGCAAAGACTGCTATCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATATCTCGGCTGATTAACCATTCTTGTATGCCAAATTGCTACGCAAGAATCATGAGTGTGGGTCATGATGAGAGCCGGATTGCACTCATTGCTAAGACTAATGTTGCTGCTGGTGATGAGCTAACGTATGACTATTTGTTTGATCCTGATGAACCAGATGAATTCAAAGTCCCCTGTTTATGTAAAGCTCCAAATTGCCGGAAATTCATGAATTAG 3267 0.4108 MIIKRNLKSQMPSLKRCKIGDSAGDHDGYSAAPKKRKTNGYYPLNLLGDVAAGVIPVNFHGLLSAGVSEKAFSASWCAEVSCSTPEVESKSEVENSVRAKMNQPAEVTRPPLVRTSRGRVQVLPSRFNDSVIENWKKEEKTSLCDYSFEDEDEDEYECRKEKISSRTPKANNKNSKKGRKDENIGFKSRKYSTLCQQETREDGRVSYSNFNMRRCSTSRSTLIAKGEQLIKDERQRFVEMEVDEFTGNEIHLKENDQKKGKIYGAEDFYAGDIVWAKAGKKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVTRGLIFPFIDYVDRFQGQCELCHYSSSDFEMAIEEAFLADQGFTEKLMEDINIASGNTGYDETVLKGRQQALLPVQRLLKYSCIIFWGHLRKANNLTSFAKGNGFWHYMFPLGHVGLSLTCKFDILLCVAYIIKLQFPYSTNARVWIRTEVRCDGCKVWVHAECDKISSNLFKNLGDTEYYCPSCKAKFDFELSDSEKSQPKVKWNKNGGQLVLPNKVTVVCNGLEGIYFPSLHLVVCKCGFCGTEKQPLSEWEQHTGSKSRNWRKSVRVKGSMLPLEQWMLQLAEFHENALVSVKPRKPSLKERKRKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKPCETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVAFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLKKNGRQTTKMVSYCAYHRAPNPDTVLVMQTPLGVISTKSLHQNKKKTGSRLISCNRTKLEETPEDNTEHDPFSAARCRVFQRTNHTKKRAADEAIPHHVKGHYHHSLNTIQSLNANRVLEKPQTFSSFRERLYHLQKTENERVCFGRSGIHGWGLFARINIQEGDMVLEYRGEQVRRSVADLREARYRLEGKDCYLFKISEEVVVDATDKGNISRLINHSCMPNCYARIMSVGHDESRIALIAKTNVAAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2754 1088 CDD ePHD_ATX3_4_5_like 711 822 IPR041955 -
Sto9g2754 1088 Pfam SET domain 957 1062 IPR001214 GO:0005515
Sto9g2754 1088 Pfam PHD-zinc-finger like domain 710 822 - -
Sto9g2754 1088 Gene3D SET domain 833 1088 IPR046341 -
Sto9g2754 1088 ProSiteProfiles Extended PHD (ePHD) domain profile. 708 823 IPR034732 -
Sto9g2754 1088 ProSiteProfiles PWWP domain profile. 270 339 IPR000313 -
Sto9g2754 1088 SMART set_7 946 1069 IPR001214 GO:0005515
Sto9g2754 1088 SMART PostSET_3 1072 1088 IPR003616 -
Sto9g2754 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 705 IPR013083 -
Sto9g2754 1088 SUPERFAMILY SET domain 939 1085 IPR046341 -
Sto9g2754 1088 MobiDBLite consensus disorder prediction 160 182 - -
Sto9g2754 1088 Gene3D - 264 371 - -
Sto9g2754 1088 CDD PHD_TCF19_like 479 513 - -
Sto9g2754 1088 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1088 - -
Sto9g2754 1088 ProSitePatterns Zinc finger PHD-type signature. 657 702 IPR019786 -
Sto9g2754 1088 SUPERFAMILY Tudor/PWWP/MBT 267 367 - -
Sto9g2754 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 825 IPR013083 -
Sto9g2754 1088 Pfam PWWP domain 271 364 IPR000313 -
Sto9g2754 1088 ProSiteProfiles SET domain profile. 946 1063 IPR001214 GO:0005515
Sto9g2754 1088 SMART PHD_3 455 514 IPR001965 -
Sto9g2754 1088 SMART PHD_3 656 703 IPR001965 -
Sto9g2754 1088 SMART PHD_3 767 823 IPR001965 -
Sto9g2754 1088 Pfam PHD-finger 669 703 - -
Sto9g2754 1088 ProSiteProfiles Zinc finger PHD-type profile. 654 705 IPR019787 -
Sto9g2754 1088 CDD SET_SETD1-like 933 1084 - -
Sto9g2754 1088 SUPERFAMILY FYVE/PHD zinc finger 655 719 IPR011011 -
Sto9g2754 1088 ProSiteProfiles Post-SET domain profile. 1072 1088 IPR003616 -
Sto9g2754 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 518 IPR013083 -
Sto9g2754 1088 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1088 IPR025780 -
Sto9g2754 1088 CDD PHD_ATX3_4_5_like 656 702 IPR042011 -
Sto9g2754 1088 PANTHER PHD FINGER PROTEINS 1 1088 - -
Sto9g2754 1088 SUPERFAMILY FYVE/PHD zinc finger 479 517 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2754 Sto-Chr9 29329253 29338662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2754 657 822 C2H2 Transcription Factor Family AT3G14740 33.526 5.97e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto9g2754 zf-HC5HC2H_2 5.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2754 - - aprc:113853254 1633.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2754 9 29329253 29338662 Sto9g2754 9 29329253 29338662 ECH