Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2744 ATGATTTTGATTTCTGGGTATTTCATTTATCCATCACTTGTGGGAGGTCTCGGCGACTGGATGGACTTGGACAACATCGAGTGTGTGTCGTCCTCAGATGGCATGGATGAAGATGAGATCCAACAACATCATACTCTGAATCCTCACCCCCATCATCATCACTCTGACTTTTCATCCACAAAGCCTCGCAATGGTGCCACCAATTTGGGCCCTACGGCCATTGCTCCCGCTACCAGTGTTCACGAATTGCTCGAATGCCCTGTTTGTACCAATTCAATGTATCCACCAATTCATCAGTGTCACAATGGTCACACGCTATGTTCAACATGTAAAACAAGGGTGCACAACCGATGTCCCACATGCAGACAAGAGCTTGGAGATATTAGGTGTTTGGCTCTGGAGAAGGTATTTCATTGTTTTGGCCAATACTTCTGCcttcattttgaagcatttcaGCTTGGGATGGCCCCTGTATACATGGCATTTCTTCGTTTCATGGGTGACGAGAATGAGGCTCGGAACTATAGCTATAGCCTAGAAGTTGGTGCGAATGGCAGGAAACTCATATGGGAGGGTACTCCAAGAAGTATTAGAGATAGCCACCGTAAAGTGAGGGATAGCCATGATGGTCTCATCATCCAAAGAAATATGGCCCTATTTTTCTCTGGTGGAGATAGGAAGGAGCTTAAGCTCAGAGTCACTGGAAGGATATGGAAAGAACAACAGAATCCGGATGCTGGAGTGTGTATTCCAAATCTTTGTAGCTAA 768 0.4466 MILISGYFIYPSLVGGLGDWMDLDNIECVSSSDGMDEDEIQQHHTLNPHPHHHHSDFSSTKPRNGATNLGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2744 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 135 246 - -
Sto9g2744 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 21 136 - -
Sto9g2744 255 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 21 136 - -
Sto9g2744 255 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 135 246 - -
Sto9g2744 255 CDD RING-HC_SIAHs 84 122 - -
Sto9g2744 255 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 129 234 IPR008974 GO:0005515
Sto9g2744 255 ProSiteProfiles Zinc finger RING-type profile. 86 122 IPR001841 -
Sto9g2744 255 Pfam Seven in absentia protein family 135 234 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sto9g2744 255 SUPERFAMILY RING/U-box 79 125 - -
Sto9g2744 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 128 IPR013083 -
Sto9g2744 255 SUPERFAMILY TRAF domain-like 107 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2744 Sto-Chr9 29261354 29264016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2744 136 241 C3H Transcription Factor Family AT2G41980 82.075 1.57e-60 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2744 K04506 - zju:107414770 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2744 9 29261354 29264016 Sto5g1279 5 8701503 8704840 ECH
Sto9g2744 9 29261354 29264016 Sto9g2744 9 29261354 29264016 ECH