Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2740 ATGGGGAAGAAAGGAGGCGGATGGTTCTCCACGGTCAAGAAAGTTTTCAAATCCTCGTCTTCTTCTAAGCACGAATCGCCCGTCCCAGTCAGGAAGAAGGATAATAATGCAGAGAAATGGCAAGGTGAAGCGCCAGAGGTGGTGTCTTTCGAGCACTTTCCTGCGGAGAGTTCTGGGGATGCCACCAATGAGCACAGTATCACGTCCACACCTGTGACTGAAGATAGAAATCATGCGATTGCCGTTGCAGCAGCAACTGCTGCAGCTGCCGAAGCTGCGGTTGCAGCAGCTCAAGCTGCCGCCAGAGTTGTTCGATTGGCAGGTTATGGACGTCAGTCCAAGGAAGAAAGAGCGGCAACGCTTATTCAATCTTACTACAGAGGTTACCTAGCTCGACGTGCCCTGCGTGCTTTGAAGGGATTGGTGAGGCTGCAAGCACTTGTGAGGGGGCATAATGTGCGGAAGCAAGCGCAAATGACTATGCGCTGTATGCAAGCATTAGTTCGAGTACAGGCGAGAGTAAGAGCTCGAAGATTCCAGTTGACCCACGAAAAGCTTCAGAAGAGAGAGGAGAAACATGAAGCAGCTGTGAAGAGGGAGAGATCTCTTGCTTACGCTTTCAACTATCAGCGTGAAAAGGCCCAATGGGGTTGGAACTGGTTAGAGCGTTGGATGTCATCACAACCATACAACGATGACATGTCTGAAAAGACCGTGGAAATGGACATTGTTGCACCTCCAGGCTCAACAGGCAACATCAACATGTTCAACATGGGCCTAATGAACCAAGAGTTTCTTGATTCAAGCCCAATTTCCAACAGATCTAAACACCAAAGACATCTCAGTGCAAATGTACCTAGCTATATGGCCCCCACCCAGTCTGCAAAAGCTAAGGTGAGAGGCCAAGGAGGCCCGATCAAGCCACGTGGCTCACCTGGGCCTCAGTGGAACTCATCCACTAAGAGATCCTCTGGTATTGGGTCGGCCTGTGATTCCTCCAGCTCTGGTGGAGGAGCGTCAAATTATAAGTTTCCAAGGAGCCCAAGCCCAAAAATTAATGGGACTCGTCCACTGTCTAGGAGGATTGCAGGTGGTAGCCCGGATTACGTTGCAATTGACGATTGGTCCCTCCCTCTTGGAGCCCATGGTTGGGCATGA 1158 0.506 MGKKGGGWFSTVKKVFKSSSSSKHESPVPVRKKDNNAEKWQGEAPEVVSFEHFPAESSGDATNEHSITSTPVTEDRNHAIAVAAATAAAAEAAVAAAQAAARVVRLAGYGRQSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRFQLTHEKLQKREEKHEAAVKRERSLAYAFNYQREKAQWGWNWLERWMSSQPYNDDMSEKTVEMDIVAPPGSTGNINMFNMGLMNQEFLDSSPISNRSKHQRHLSANVPSYMAPTQSAKAKVRGQGGPIKPRGSPGPQWNSSTKRSSGIGSACDSSSSGGGASNYKFPRSPSPKINGTRPLSRRIAGGSPDYVAIDDWSLPLGAHGWA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2740 385 Gene3D - 112 163 - -
Sto9g2740 385 MobiDBLite consensus disorder prediction 268 291 - -
Sto9g2740 385 MobiDBLite consensus disorder prediction 268 369 - -
Sto9g2740 385 MobiDBLite consensus disorder prediction 16 45 - -
Sto9g2740 385 PANTHER IQ-DOMAIN 21 1 358 - -
Sto9g2740 385 MobiDBLite consensus disorder prediction 312 354 - -
Sto9g2740 385 Coils Coil 183 203 - -
Sto9g2740 385 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Sto9g2740 385 Pfam Protein of unknown function (DUF4005) 269 337 IPR025064 -
Sto9g2740 385 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Sto9g2740 385 MobiDBLite consensus disorder prediction 26 40 - -
Sto9g2740 385 PANTHER IQ-DOMAIN 5-RELATED 1 358 - -
Sto9g2740 385 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Sto9g2740 385 Pfam IQ calmodulin-binding motif 142 157 IPR000048 GO:0005515
Sto9g2740 385 SMART iq_5 114 136 IPR000048 GO:0005515
Sto9g2740 385 SMART iq_5 137 158 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2740 Sto-Chr9 29236218 29239280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2740 1 351 IQD Protein Family AT3G49260 49.231 4.23e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2740 - - aip:107605892 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2740 9 29236218 29239280 Sto9g2740 9 29236218 29239280 ECH