Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2728 ATGGGTAGCTTCAGTGAAGACGGAGAATGCAGATTCTTCGATGCTCCAGAGGAGGTTATGTCTATTGCTGATGCAAACGGGATGTGCAATAGTTTGGAATATGAAGCTTGGATTCAAAGCCCAAGGAGTGTGAATGAGCGTCGAAGTAAGTTCATGAAGTGGATGGGGCTGAGTTTGGATCGATTTGCTCTTGAAAATTCAGTAGATGTTTGTAGTCTTGAGCAGGAAGAAGATATGAATATAATCAAAGATAGTAGTCGAAACATTACTGGAACCTTCGATGCTGCGGAGGAGTTTTGTTCAATTCGGTCATCAATATCTTGTTGGTCTACTGTTAATTCGATAGACGAGATAGGTTCAGTGGAGAACCTGGCATGCAATGATGAGAATTTAGACATGAAAATGGGGCTTGATTTGGATCAAGAGAGTCAGCATGGTAGCAAGAGTGATGCTAGAGAGGTTGTTTCAGATCCATTGGTGGTTGCGGAGGAGCATGAGTATAGTGAGAACACATCTGGGCATGAGGAGATGAATGGTTTTGGACAGGGGAGGAAGAAGGCAAAAGGGGGTTGGTTAAAAAAATTACGTTCAATGACATGCATGAATAATAGGCAAGGTGATGGGACAAAAGAAGGAAGTTGTGCATTCTCAGGGTGTAGGATTCAGAAAGTTAAAGTCCGCCATTGCAGGAGGCAAAGAAAGGAACTCTCAGCTCTTTATATGGGGCAAGATATTCAAGCTCATGAGGGTTCAATTTTGACCATGAAATTTAGCCCTGATGGGCAGTATCTTGCCAGTGCTGGTGAAGATAGGATTGTGCGATTGTGGCAAGTGGTGGAAGATGAGAGGTGTAATGAAATTGATATTCCAGAAGTTGACTCATCCTGCATATATTTTACAGTGAATAATCTCTCTGAATTGGCACCCCTATTTATAGATAAGGAAAAAATTAGCAGACTGAAGAGTCTGAAGAGAACTTCAGATTCTGCTTGCATCATTTTCCCTCCTAAGGTCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTCCATGGGCATACTGGTGAAATATTGGACCTCTCTTGGTCAGAGAATAATTATCTGCTGTCATCTTCAGTTGACAAAACTGTTCGTCTATGGCGAGTGGGGTATGACAGTTGCATAGAAGTTTTCTCACACAGTAATTATGTGACATGTGTACAATTCAATCCCATGGATGATAACTATTTCATCAGCGGTTCTATAGATGGAAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGATTGATATCAGAGAAATTGTGACTGCAGTGTGCTATCAACCTGATGGGCAGGGAGGGATCATTGGTTCCATTACAGGAAATTGTCGGTTCTACAATGTCTCAGAGAATCACTTGCAGTTGGACTCACAACTATGCTTAATTGGTAAAAAGAAACATCCTGGCAGAGGGATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAGCAAAGTTTTGGTTACCAGTTCTGATTCAAAAGTCAGAATCCTTGATGGGCTTAATGTGATTGGCAAATACAAAGGCATTGGTGCTGGGAGCCAACTATCTGCATCGTTTACTTCAGATGGGAAACACATTTTATCAGCCTGTGAGGACTCTAATGTATATCTATGGAATGTTAGTCAGGAAGCATCTAGTCCAACAAAAGCCAAGAAGATTAAGTCTTGTGAGCGATTTTATTCAAACGCGTCTGTTGCAGTACCATGGTGTGGTTTGAAATCCCAAAATCACGATCATGATCACCAATCAGATATGTTGGGTTTGAAATCACCTCAAATTATACGTCTCAACCCACCTGCTTCTTTTTCTCTCAGCCAAGATTTTTACTTGGAGTCTTTTCCCAAGGGATCCGCGACGTGGCCCGAGGAGAAACTTCCTGTTTCAAGCCCCAAGCCTAAAAAGTCTACAATGCATAAATCTGAATACAAGTTCTTTAAGTCTTCTTGCAAGAGTACCTCCAATTCTCATGCATGGGGTATGGTCATTGTGACTGCAGATTGGGATGGGCGGATCAAATCATTCCACAATTATGGTTTACCTGCACCCATTTGA 2100 0.4181 MGSFSEDGECRFFDAPEEVMSIADANGMCNSLEYEAWIQSPRSVNERRSKFMKWMGLSLDRFALENSVDVCSLEQEEDMNIIKDSSRNITGTFDAAEEFCSIRSSISCWSTVNSIDEIGSVENLACNDENLDMKMGLDLDQESQHGSKSDAREVVSDPLVVAEEHEYSENTSGHEEMNGFGQGRKKAKGGWLKKLRSMTCMNNRQGDGTKEGSCAFSGCRIQKVKVRHCRRQRKELSALYMGQDIQAHEGSILTMKFSPDGQYLASAGEDRIVRLWQVVEDERCNEIDIPEVDSSCIYFTVNNLSELAPLFIDKEKISRLKSLKRTSDSACIIFPPKVFRLLEKPLHEFHGHTGEILDLSWSENNYLLSSSVDKTVRLWRVGYDSCIEVFSHSNYVTCVQFNPMDDNYFISGSIDGKVRIWAIPDCHVVDWIDIREIVTAVCYQPDGQGGIIGSITGNCRFYNVSENHLQLDSQLCLIGKKKHPGRGITGFQFLPQDSSKVLVTSSDSKVRILDGLNVIGKYKGIGAGSQLSASFTSDGKHILSACEDSNVYLWNVSQEASSPTKAKKIKSCERFYSNASVAVPWCGLKSQNHDHDHQSDMLGLKSPQIIRLNPPASFSLSQDFYLESFPKGSATWPEEKLPVSSPKPKKSTMHKSEYKFFKSSCKSTSNSHAWGMVIVTADWDGRIKSFHNYGLPAPI 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2728 699 Pfam WD domain, G-beta repeat 344 379 IPR001680 GO:0005515
Sto9g2728 699 Pfam WD domain, G-beta repeat 246 276 IPR001680 GO:0005515
Sto9g2728 699 Pfam WD domain, G-beta repeat 386 421 IPR001680 GO:0005515
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 389 421 - -
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 389 IPR001680 GO:0005515
Sto9g2728 699 Gene3D - 328 583 IPR015943 GO:0005515
Sto9g2728 699 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Sto9g2728 699 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Sto9g2728 699 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 278 - -
Sto9g2728 699 Gene3D - 188 295 IPR015943 GO:0005515
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 381 - -
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 389 421 IPR001680 GO:0005515
Sto9g2728 699 SMART WD40_4 515 555 IPR001680 GO:0005515
Sto9g2728 699 SMART WD40_4 383 422 IPR001680 GO:0005515
Sto9g2728 699 SMART WD40_4 474 514 IPR001680 GO:0005515
Sto9g2728 699 SMART WD40_4 238 277 IPR001680 GO:0005515
Sto9g2728 699 SMART WD40_4 425 463 IPR001680 GO:0005515
Sto9g2728 699 SMART WD40_4 342 380 IPR001680 GO:0005515
Sto9g2728 699 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 698 - -
Sto9g2728 699 SUPERFAMILY WD40 repeat-like 244 689 IPR036322 GO:0005515
Sto9g2728 699 MobiDBLite consensus disorder prediction 166 185 - -
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 564 IPR001680 GO:0005515
Sto9g2728 699 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 286 IPR001680 GO:0005515
Sto9g2728 699 PANTHER WD REPEAT DOMAIN 44 6 698 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2728 Sto-Chr9 29145159 29148651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2728 341 552 U-box Gene Family AT2G33340 25.110 1.04e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2728 - - gmx:100817209 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2728 9 29145159 29148651 Sto5g1307 5 8896364 8899599 ECH
Sto9g2728 9 29145159 29148651 Sto9g2728 9 29145159 29148651 ECH