Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2726 ATGTCGCTCAGACGAAGGACTCTTGCTCCCAAACCGGCATTGAAGTCCTCTTCAATCGGTAAATCCTCCGATTACGATGACGTCAGCTGTGAAGAATGTGGATCCGGCCACTCGGCGGCCAAGTTGGTTCTCTGCGACAACTGTGATCGAGGATACCATTTATTCTGCCTCAGACCTATTCTTGTTTCTGTGCCCAGAGGATCTTGGTTCTGCCCTTCGTGCTCTAAGAACAAGAAGCCCAAGTCTTTTCCTCTAGTTCAGACCAAAATTATTGATTTCTTTCGCATTCAACGATCATTGCAGGATACCCAATCATCTAGTCAAGATAATCGAAAGAAAAGAAAGCGGGCTAGCAGTCTTGTGATgtcgaaaaagaaaaggaagctaCTGCCATTCTGCCCAAGTGAGGATCCTTCAAGGAGATTGGAACAGATGGCATCTCTGGCAACGGCATTGACAGCAACTAATACAGAATTCAGCAACGAGCTCACTTACATTCCTGGAATGGCACCAAAATCAGCTAATCGTGCGCCTCTTGAACAGGGTGGAATGCAGGTTTTGTCAAAAGAAGATACTGATACCCTGAACTTGTGCAAGAGTATGATGGAAAGAGGAGAATGGCCACCCCTCATGGTTGTTTTTGATCCTCAGGAAGGGTTCACCGTTGAGGCAGATAAATGTATAAGAGACTGGACAATAATCACAGAGTATGTCGGAGATGTTGACTATTTGAGGAATCGTGAAAATGATGATGGGGATAGCATGATGACGCTTCTTTCAACTTCTGATCCTTCACGAACGCTAGTAATTTGTCCAGACAAACGCAGTAACATTGCCCGGTTTATCAACGGCATTAACAATCACACACCggaaggaaagaagaagCAGAACTTAAAATGCGTGAGGTTTGACGTCAATGGTGAATCTCGGGTTCTGTTGGTTGCAAACAGAGACATATCCAAGGGGGAGAGGTTGTATTATGACTACAATGGAAGTGAGCATGAATATCCAACCGAACACTTTGTGTAA 1029 0.4325 MSLRRRTLAPKPALKSSSIGKSSDYDDVSCEECGSGHSAAKLVLCDNCDRGYHLFCLRPILVSVPRGSWFCPSCSKNKKPKSFPLVQTKIIDFFRIQRSLQDTQSSSQDNRKKRKRASSLVMSKKKRKLLPFCPSEDPSRRLEQMASLATALTATNTEFSNELTYIPGMAPKSANRAPLEQGGMQVLSKEDTDTLNLCKSMMERGEWPPLMVVFDPQEGFTVEADKCIRDWTIITEYVGDVDYLRNRENDDGDSMMTLLSTSDPSRTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGESRVLLVANRDISKGERLYYDYNGSEHEYPTEHFV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2726 342 CDD SET_ATXR5_6-like 205 342 - -
Sto9g2726 342 MobiDBLite consensus disorder prediction 1 25 - -
Sto9g2726 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Sto9g2726 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 1 339 - -
Sto9g2726 342 Gene3D SET domain 114 342 IPR046341 -
Sto9g2726 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 85 IPR013083 -
Sto9g2726 342 Pfam SET domain 106 330 IPR001214 GO:0005515
Sto9g2726 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Sto9g2726 342 SMART PHD_3 29 75 IPR001965 -
Sto9g2726 342 Pfam PHD-finger 30 76 IPR019787 -
Sto9g2726 342 SUPERFAMILY SET domain 200 332 IPR046341 -
Sto9g2726 342 MobiDBLite consensus disorder prediction 102 121 - -
Sto9g2726 342 PANTHER HISTONE ACETYLTRANSFERASE 1 339 - -
Sto9g2726 342 CDD PHD_RSF1 30 74 - -
Sto9g2726 342 SUPERFAMILY FYVE/PHD zinc finger 18 81 IPR011011 -
Sto9g2726 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2726 Sto-Chr9 29129766 29132103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2726 25 91 C2H2 Transcription Factor Family AT3G01460 37.313 2.01e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto9g2726 SET 3.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2726 K24406 - mnt:21395092 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2726 9 29129766 29132103 Sto9g2726 9 29129766 29132103 ECH