Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2717 ATGGCAAAGGAAATGATTCTTAAGGACTCACAGATCATACCAGCATCTGAGTTGATTTCTCATACCATCCTTGGTATATCTGATACTGTCAAAGCAGCCAATGAGGTCCTCATTCAGAAGGAGAATTTTAAGAAATTCTCAAGTTGCTTGGAGAAAGTCTCATTTATTCTGAGAGAACTATCAAATGTAGACTTACCCCATACAGAGAGCTTGGAAAGTGTCCTTGGTGTTCTAAACCGAGAGGTTAATTTGGCTAGGCAGCTAGCTTTGGAGTGCAATAGTAGTAGTAGggtttatcttttgataaaTTGTAGAAACATCGTTAAGCGCTTGGAATATTGTACAAAAGATATCAGTCAAGCAGTCAAGTTCATCTTCATCCCTCCCATCTCTTTGGACACTTCATCTGGTCTGAATGAACAGATAAGCGAGCTATGCCAGCACATGGAAGCTACTGTGTATCAAGCTGCTGTAGAAGATGAGGAAATCTTAGAGAAAATTGAATCAGCAATTCAAGAGGGAAATGTTGATCGCTCTTGTGTAAACAAGTTGCTAGCTTGTATAGCAGATGTTTCTGGAATGTCCACTGAGCAGGATGCTTTGATGAGAGAATTTAAAGAGCTGAAAAGAGAATTGGAGAGAGCCAAGTCTAGAAAAGATATGGTAGAGACTCTACACATTGAGCAGATCATTTCATTTCTTGAGAAGGCTGACTTTGTAACTtcaatgaaagagaaagagaagtatTTCGAAAAGCGAAATTCTTTGGGAAGACGACCATTGGAAGCTCTGCAGTCATTTTACTGTCCAATCTGTCTTGATATTATGGTGGATCCTGTGGAGATTGCCTCTGGCAAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCAGAAGGGAATAATCATTGTCCCTTGACCATGTTGCCTCTGGATACATCAATATTAAGGCCCAATAAGACTCTGAGACAATCAATTCAAGAATGGAAAGACAGGAACAACATCATTACCATTTCCAATATCAAATCCAAACTCCAAACAGATGAAGAAGAGGAAGTTCTTCAATCCTTAGACAAACTGCATGAACTATCCATGGAAAAAGAGATTCATAGAGAATACATAAAAATGGAGAATTACTTTTCAGTTCTTGTTGGACTCCTTGCTGCTAAAAATCGTGAAGTTAGAAAGCGGGTTTTGCTTATACTGTCTTTGCTTGCAAAGGATAATGAAGAGAACAAGGAAGATATTGCTAAGGTGGATAATGCACTTCAATTAATTGTTCGTTCGCTTGCACGACAAATTGGGGAAAGCAAGTTAGCATTGGAGTTGCTATTGGAGTTATCTAGAAGTAATGTGGTGCGTGACCTCATAGGAAATGTTCAAGGAAGCATACTTCTACTGGTGACTATGTTAAGCAGTAATGACAATGAAGCAGCCAAGAATGCATATGACCTGCTGGGGAACTTGTCTTTCCTCGATCAAAATGTTATACAGATGGCTAAGGCAAATTATCTCAAGCCTTTGCTGCAGAACCTTTTTTCAGGTTCAGAAAACATGAGGATATTAATGGCTGAAACTCTTTCAGAAATTGAATTGACTGATCATAATAAATTATCTATAATCAAAGATGGGGCACTACAGCCGCTTCTTCAATTGCTCTCAAATAATGATatgaaagtcaaggaagttgcTGTTAGAGCTCTACTAAAGCTTTCAATCTTGCCAGAGAATGGCCTGCAGATGATTAGAGAAGGTGTTGCTAAAACACTATTTGAACTGCTTTTTCATCACAGTTTAGAGTCATCAGGTCCGCGCGAATGGGTAGCAGCAACCGTAATGCATCTTGCCATATCAACCATGCACCAAAAAGTTGATGAAGAACAGGTTATATTGTTAGATTCTGAAGAAGATATATTTAAATTCTTCTCTCTGATTTCTTTCACGGGGCCTAACATACAAAGCAAGATTCTAAAAGCTTTCCAGGCAATGTGCCAAGCTCCTTCAGGTTTCACCATCAGATCAATGCTGAGACAGATCTCAGCTGCCCAGGTCTTGGTTCACTTGCTAGAGCATAATAGCCAAGCAGTCCAGTCAGATGCTGTGAAGCTGTTCTATTGCTTAACAGAAGTTGGTGATTGTAGCAGTTATTCATCATATGTGACTGAAGGTTTCATTAAAATCTTGCTCACCATCTTTGAGGCTTCTGATGATGATCCAGAAGAGCAGGCTGCTGCTATGGGTATCATCTCTAGACTTCCACAGGAGTCACAGATTACCCAGTGGCTTCTAGATTTTGGGGCGCTTCAAACTATTTTGGCTTGTCTTATGGATCCACTTAGGCATTCATTGAACAAAATTCAAGTAATAGAGAACTGTGTCCAAGCCCTTTGCCGCTTCACTGTTTCGACAAATTTGGAGTGGCAAAAGAGAGTAGCTCATGAAGGAATCATCCCAGTGTTGGTGCAATTACTGGTTTCTGGAACACCTTTGTCAAAACAGAATGCTGCCATTTCAATCAAACAGTTTTCAGAAAATTCATACCACTTGAGCAGGCCTATAAAGAACCAGGGTATATTCAAATGCTGCCTAGTGGCACATGAAGTTGGTTGCCCAGTACATCTAGGACGTTGTACTGTTGAGTCTTCATTCTGCATCTTAGAGGCTAATGCTTTGGGACCCCTTGTGAGGATGCTTACAGAGCAAGATGTGGGAATATGTGAAGCTTCATTGGATGCACTTTTGACTTTGCTTGGTAGTGAAATACTGCAGAGTGGAAGTAAGGTGCTTGCAGATGCAAATGCTATTGATCCAATGATAAAAGTACTGAGTCTTCCTGCTCCTAGGATACAGGAAAAAACACTTATTGCATTGGAACGAATACTTCAATCAATTGAGATAAAGAACGAGTATAAATCTATGGCCACAATGACATTGATAGGTATAACTCAGAGCAAAGATAGTCGTTTGAGAAGTCTTGCTGCCAAAGTCCTTGCACAATTGGGTGTAATTAATAAACAGTCTTCTTATTTTTGA 3033 0.391 MAKEMILKDSQIIPASELISHTILGISDTVKAANEVLIQKENFKKFSSCLEKVSFILRELSNVDLPHTESLESVLGVLNREVNLARQLALECNSSSRVYLLINCRNIVKRLEYCTKDISQAVKFIFIPPISLDTSSGLNEQISELCQHMEATVYQAAVEDEEILEKIESAIQEGNVDRSCVNKLLACIADVSGMSTEQDALMREFKELKRELERAKSRKDMVETLHIEQIISFLEKADFVTSMKEKEKYFEKRNSLGRRPLEALQSFYCPICLDIMVDPVEIASGKTFERSAIEKWFAEGNNHCPLTMLPLDTSILRPNKTLRQSIQEWKDRNNIITISNIKSKLQTDEEEEVLQSLDKLHELSMEKEIHREYIKMENYFSVLVGLLAAKNREVRKRVLLILSLLAKDNEENKEDIAKVDNALQLIVRSLARQIGESKLALELLLELSRSNVVRDLIGNVQGSILLLVTMLSSNDNEAAKNAYDLLGNLSFLDQNVIQMAKANYLKPLLQNLFSGSENMRILMAETLSEIELTDHNKLSIIKDGALQPLLQLLSNNDMKVKEVAVRALLKLSILPENGLQMIREGVAKTLFELLFHHSLESSGPREWVAATVMHLAISTMHQKVDEEQVILLDSEEDIFKFFSLISFTGPNIQSKILKAFQAMCQAPSGFTIRSMLRQISAAQVLVHLLEHNSQAVQSDAVKLFYCLTEVGDCSSYSSYVTEGFIKILLTIFEASDDDPEEQAAAMGIISRLPQESQITQWLLDFGALQTILACLMDPLRHSLNKIQVIENCVQALCRFTVSTNLEWQKRVAHEGIIPVLVQLLVSGTPLSKQNAAISIKQFSENSYHLSRPIKNQGIFKCCLVAHEVGCPVHLGRCTVESSFCILEANALGPLVRMLTEQDVGICEASLDALLTLLGSEILQSGSKVLADANAIDPMIKVLSLPAPRIQEKTLIALERILQSIEIKNEYKSMATMTLIGITQSKDSRLRSLAAKVLAQLGVINKQSSYF 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2717 1010 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Sto9g2717 1010 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Sto9g2717 1010 Gene3D - 869 1008 IPR011989 -
Sto9g2717 1010 Pfam Armadillo/beta-catenin-like repeat 534 572 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 492 532 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 755 801 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 367 407 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 804 844 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 450 491 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 922 962 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 878 918 IPR000225 GO:0005515
Sto9g2717 1010 SMART arm_5 533 573 IPR000225 GO:0005515
Sto9g2717 1010 Gene3D - 438 867 IPR011989 -
Sto9g2717 1010 Gene3D - 341 437 IPR011989 -
Sto9g2717 1010 CDD RING-Ubox_PUB 267 308 IPR045210 -
Sto9g2717 1010 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 10 1010 - -
Sto9g2717 1010 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 1010 - -
Sto9g2717 1010 Pfam U-box domain 267 333 IPR003613 GO:0004842|GO:0016567
Sto9g2717 1010 SUPERFAMILY ARM repeat 337 667 IPR016024 -
Sto9g2717 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 340 IPR013083 -
Sto9g2717 1010 SUPERFAMILY RING/U-box 252 336 - -
Sto9g2717 1010 Coils Coil 191 225 - -
Sto9g2717 1010 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515
Sto9g2717 1010 SUPERFAMILY ARM repeat 680 1002 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2717 Sto-Chr9 29085602 29089408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2717 265 1010 U-box Gene Family AT1G20780 26.845 5.68e-58 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2717 - - gmx:100818273 1252.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2717 9 29085602 29089408 Sto5g1312 5 8954551 8957951 ECH
Sto9g2717 9 29085602 29089408 Sto9g2717 9 29085602 29089408 ECH