Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2705 ATGCAGATCTTCGTGAAAACCCTCACCGGGAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACCATTGATAATGTGAAGGCAAAGATTCAGGACAAAGAAGGTATTCCGCCGGACCAGCAAAGATTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGTACTCTTGCCGATTACAACATCCAGAAAGGTTTGTCTAACTATTcgcattcttttgtttttagtatttttgcaGAGTCCACATTGCATCTTGTCTTGAGGCTTCGTGGTGGTATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATATGCCGCAAGTGTTATGCACGTTTACACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGTAA 432 0.4398 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGLSNYSHSFVFSIFAESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2705 143 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Sto9g2705 143 PANTHER UBIQUITIN 1 140 - -
Sto9g2705 143 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 1 140 - -
Sto9g2705 143 CDD Ubl_ubiquitin 1 91 - -
Sto9g2705 143 PRINTS Ubiquitin signature 11 31 IPR019956 -
Sto9g2705 143 PRINTS Ubiquitin signature 32 52 IPR019956 -
Sto9g2705 143 PRINTS Ubiquitin signature 53 74 IPR019956 -
Sto9g2705 143 Pfam Ribosomal L40e family 93 142 IPR001975 GO:0003735|GO:0005840|GO:0006412
Sto9g2705 143 SUPERFAMILY Ubiquitin-like 1 100 IPR029071 -
Sto9g2705 143 SMART ubq_7 1 87 IPR000626 GO:0005515
Sto9g2705 143 Pfam Ubiquitin family 3 64 IPR000626 GO:0005515
Sto9g2705 143 SUPERFAMILY Zn-binding ribosomal proteins 91 142 IPR011332 GO:0006412
Sto9g2705 143 Gene3D - 1 94 - -
Sto9g2705 143 Gene3D - 95 143 IPR038587 -
Sto9g2705 143 ProSiteProfiles Ubiquitin domain profile. 1 64 IPR000626 GO:0005515
Sto9g2705 143 SMART Ribosomal_L40e_3 92 143 IPR001975 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2705 Sto-Chr9 29020265 29021571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2705 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 88.811 7.41e-89 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2705 K02927 - sspl:121778458 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2705 9 29020265 29021571 Sto9g2705 9 29020265 29021571 ECH