Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2704 ATGATGGAGGGAGATGAGTATCTTCAAGCATCAAAGGAAAACAAAGTTGGAAGCATCACCAGTCTAAAGCCACCTCAGAATccgaaaaagaagaagaacatAATAGAAAACAAGAGGAGGTTTAGTGATGAACAAATTAAATCACTTGAGTGCATTTTTGAATCTGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTAGCAAGAGATCTGGGGTTGCAGCCTCGCCAAGTTGCCATATGGTTCCAAAACAGAAGAGCCAGATGGAAATCAAAACGGATAGAGCAAGAGTACAGAAAACTCAGAGATGAGTATGACAATTTAGCATCTCTGTTTGAGTCCATAAATAAAGAGAAGGAGTCCTTGCAAGCTGAGgtacaaaagctaagagaTTTAATGGAGACATGCCAAGATGGTAAAAGGGAAAGCAAGGTTGGGAAGGAAAATAGCACAGAAGATGGTGCTTCAGGTAGTGGACACAGCAATTGGAAAACTGAAGCAAAGTCAAGTTTGTCAAATGAGGGTTCGGAGGATGCCAAGACTAATGATGCAAGAGACTTGGCATCACTTGAAAAATGGTATAGTGTTGATCCAAGTGGTCTCTTGGATCAGTGTTGCAGCAGTTCACAATGGTTAGATTTCTGGAATTGA 651 0.3902 MMEGDEYLQASKENKVGSITSLKPPQNPKKKKNIIENKRRFSDEQIKSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLRDEYDNLASLFESINKEKESLQAEVQKLRDLMETCQDGKRESKVGKENSTEDGASGSGHSNWKTEAKSSLSNEGSEDAKTNDARDLASLEKWYSVDPSGLLDQCCSSSQWLDFWN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2704 216 MobiDBLite consensus disorder prediction 150 177 - -
Sto9g2704 216 MobiDBLite consensus disorder prediction 137 183 - -
Sto9g2704 216 MobiDBLite consensus disorder prediction 13 27 - -
Sto9g2704 216 MobiDBLite consensus disorder prediction 1 37 - -
Sto9g2704 216 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Sto9g2704 216 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Sto9g2704 216 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Sto9g2704 216 Gene3D - 17 97 - -
Sto9g2704 216 Coils Coil 84 139 - -
Sto9g2704 216 SMART HOX_1 35 96 IPR001356 GO:0003677
Sto9g2704 216 SUPERFAMILY Homeodomain-like 26 92 IPR009057 -
Sto9g2704 216 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Sto9g2704 216 CDD homeodomain 39 93 IPR001356 GO:0003677
Sto9g2704 216 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Sto9g2704 216 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 215 - -
Sto9g2704 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 215 IPR045224 GO:0003700
Sto9g2704 216 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2704 Sto-Chr9 29017053 29017801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2704 1 215 Homeobox Transcription Factor Family AT2G46680 39.015 8.65e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto9g2704 Homeodomain 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2704 K09338 - gmx:100499926 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2704 9 29017053 29017801 Sto5g1335 5 9116284 9117247 ECH
Sto1g0835 1 8811337 8813043 Sto9g2704 9 29017053 29017801 ECH
Sto9g2704 9 29017053 29017801 Sto9g2704 9 29017053 29017801 ECH