Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2692 ATGATGTCACAGCCAAGCCAAAATAGTAAGATGATGAGTCCAAGCAATGCCAAACAAGTTGGTGACACAACCTATACGAAGATCTTCGTTGGAGGATTGGCTTGGGAGACTAGAAGAGACACTCTCACACACTATTTTGAGCAGTTTGGAGAGATCTTGGAGGCTGTTGTTATCACTGATAGATACACTGCAAGATCAAAAGGCTATGGCTTTGTGACTTTCAAGGACCCTGATTCTGCAATAAGAGCTTGTCGCAATCCCTATCCTGTCATTGATGGAAGGAGAGCTAATTGTAATCTTGCAGCTCATGGTGCTCACAGATTCAATCCATCTTCCACAGTTGTAGGGAGGGAGAAATTTAGTAGTACCACTTCTTGGTCTATGCCTATGGTACCAATCCAATTTCAAGGAACCCCATCTTACTATAATCAGCAAATACCTCACTATGCATTCCCTTATGCACCCTACAGGTATCCTGATTATCCTCCCCCACAAGAAGTTTATCCAATGAACTACTATAATGGATATGGTGGAGAGCAAGTTGGAATTCGTTGGGGTTCAGGAATTTACCATCCCTTTTATGGGGTTGGACAGTTTGTTCCAGCAGCATATGTAAAAAAGGCACAGTACTACCCTCACATGCCATCTCAGCAATCCTCAggcatatcacaacctatatcagCTCCTCCTTCAATATCTACCTCTGGATTGGTGTCAGGAACAGTAGGTGCTGCTGCTGCAGGAATGGTAGGAGGCTCCCCTGATCGGAAATCTTGA 777 0.4286 MMSQPSQNSKMMSPSNAKQVGDTTYTKIFVGGLAWETRRDTLTHYFEQFGEILEAVVITDRYTARSKGYGFVTFKDPDSAIRACRNPYPVIDGRRANCNLAAHGAHRFNPSSTVVGREKFSSTTSWSMPMVPIQFQGTPSYYNQQIPHYAFPYAPYRYPDYPPPQEVYPMNYYNGYGGEQVGIRWGSGIYHPFYGVGQFVPAAYVKKAQYYPHMPSQQSSGISQPISAPPSISTSGLVSGTVGAAAAGMVGGSPDRKS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2692 258 Gene3D - 1 114 IPR012677 -
Sto9g2692 258 SUPERFAMILY RNA-binding domain, RBD 12 110 IPR035979 GO:0003676
Sto9g2692 258 SMART rrm1_1 27 99 IPR000504 GO:0003723
Sto9g2692 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Sto9g2692 258 PANTHER BOULE-RELATED 2 245 IPR037366 GO:0003729
Sto9g2692 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Sto9g2692 258 CDD RRM_RBM24_RBM38_like 26 101 - -
Sto9g2692 258 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 2 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2692 Sto-Chr9 28954543 28955811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2692 22 163 C2H2 Transcription Factor Family AT2G19380 28.481 1.40e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2692 - - gmx:100788634 293.123