Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2690 ATGGCGGTTGCTGAGAATGCCGGAGCCATAATCGGCTCTTCCAGTCAAAATTTGGACAACAGTGTAGTGTCGTCGGACTCGACAGTGACAAATGAGCTGGAAAAATCGAAGCCCAGAACTGGTTCCATTGGAAATGGTGTAGAAACAAATGTTCAGCCCATCAACGGCGATCAGAATCTGAACGATGTGTTCAACCATCAGGATAGAGTTCCGACGACTGTAACAGCCCCCAACGGTAATTACAAGCCTCAAATGACTCAGATGCAAAATGGGTTTGAGGCAAATGGGGTCCAGAACCAGCAGATGGTGGTAACCAACGGTGGATACGGGAGTAAGCAGATGTCCAACGGAGTAAGAAATGGAGAAGATGTCGGTGAGAGTTTCAAGCGCGATATGAGGGATTTGGAGGAACTGTTGTCTAAGTTGAATCCCATGGCTGAGGAATTTGTGCCTCCGTCACTTACAAATAGTCATGGGTTcttaggtggtggtggtgggtttgGCTACCCTAACAATTTTCTACTCCCCACTAATTTTGGCAATGCTAATGGCCCAACTAACCGAAggAGGAAGAATGGCTATAATCAGGGGAAGCGAAGAGCAAATAATAAAATGGATatggagaagagagaagagatgATTAGGAAGACTGTTTATGTGTCTGACATTGATCAACAGGTCACTGAAGAGCAGTTGGCAGCACTTTTTCTTAACTGTGGCCAGGCAAAAACtGTTGTTGATTGCCGAGTATGTGGGGATCCTAATTCTATTCTTCGATTCGCCTTCATTGAGTTTACAGATGAAGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACTATGCTTGGATATTACCCAGTGAGAGTTCTGCCTTCAAAAACTGCTATTGCACCAGTTAATCCCACATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGGTTACTCAGGCAGATGTTAAACTCTTCTTTGAAACTATCTGTGGAGAGGTTCAACGGTTGAGGCTTCTTGGAGATTACCATCACTCGACTAGAATTGCATTTGTTGAGTTTACAGTGGCTGATAGTGCAATTGCTGCTCTGAACTGCAGTGGTGTGATTTTGGGTACGCTTCCTATCAGggtaAGTCCTTCAAAGACACCTGTCCGTTCTCGTGCACCACGAACTTCAATGCAGTGA 1215 0.4296 MAVAENAGAIIGSSSQNLDNSVVSSDSTVTNELEKSKPRTGSIGNGVETNVQPINGDQNLNDVFNHQDRVPTTVTAPNGNYKPQMTQMQNGFEANGVQNQQMVVTNGGYGSKQMSNGVRNGEDVGESFKRDMRDLEELLSKLNPMAEEFVPPSLTNSHGFLGGGGGFGYPNNFLLPTNFGNANGPTNRRRKNGYNQGKRRANNKMDMEKREEMIRKTVYVSDIDQQVTEEQLAALFLNCGQAKTVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFETICGEVQRLRLLGDYHHSTRIAFVEFTVADSAIAALNCSGVILGTLPIRVSPSKTPVRSRAPRTSMQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2690 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 392 IPR000504 GO:0003723
Sto9g2690 404 CDD RRM1_CID8_like 214 296 IPR034823 -
Sto9g2690 404 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 404 - -
Sto9g2690 404 CDD RRM2_CID8_like 312 393 IPR034825 -
Sto9g2690 404 Gene3D - 178 296 IPR012677 -
Sto9g2690 404 Gene3D - 303 400 IPR012677 -
Sto9g2690 404 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 404 - -
Sto9g2690 404 SMART rrm1_1 217 290 IPR000504 GO:0003723
Sto9g2690 404 SMART rrm1_1 317 388 IPR000504 GO:0003723
Sto9g2690 404 SUPERFAMILY RNA-binding domain, RBD 307 398 IPR035979 GO:0003676
Sto9g2690 404 Pfam Ataxin-2 C-terminal region 139 153 IPR009818 -
Sto9g2690 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 283 IPR000504 GO:0003723
Sto9g2690 404 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 381 IPR000504 GO:0003723
Sto9g2690 404 SUPERFAMILY RNA-binding domain, RBD 190 295 IPR035979 GO:0003676
Sto9g2690 404 MobiDBLite consensus disorder prediction 179 203 - -
Sto9g2690 404 MobiDBLite consensus disorder prediction 15 51 - -
Sto9g2690 404 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2690 Sto-Chr9 28948431 28952355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2690 217 389 Eukaryotic Initiation Factors Gene Family AT4G34110 26.554 7.93e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2690 - - aip:107622933 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2690 9 28948431 28952355 Sto9g2690 9 28948431 28952355 ECH