Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2684 ATGGCATCCAGCGAGTTGGCTTGTTCTTACGCCGCTATGATACTCCACGATGACGGAATCGCAATTACCGCGGAGAAGATTAATACTTTGGTGAAAATGGCTAATGTGTCTGTGGAATCGTACTGGCCTAGCCTATTTGCGAAGCTTGCGGAGAAGAGGAACATTGACGACTTAATTTTGAATGCTGGTTCGGGCGGCGCTCCTGCTGTGGCAGTGGCTGCTCCTGCTGCCGGTGCTGGTGCCGGATCCGCCGCCGCAGCGCCTGCCGCTGAGGAAAAGAAGGAAGAACCAAAGGAAGAGAGTGATGATGACATGGGATTCAGCTTGTTTGATTAG 336 0.5238 MASSELACSYAAMILHDDGIAITAEKINTLVKMANVSVESYWPSLFAKLAEKRNIDDLILNAGSGGAPAVAVAAPAAGAGAGSAAAAPAAEEKKEEPKEESDDDMGFSLFD 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2684 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 111 - -
Sto9g2684 111 CDD Ribosomal_P1 5 64 - -
Sto9g2684 111 MobiDBLite consensus disorder prediction 84 111 - -
Sto9g2684 111 Pfam 60s Acidic ribosomal protein 22 110 - -
Sto9g2684 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Sto9g2684 111 Gene3D - 1 63 IPR038716 -
Sto9g2684 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Sto9g2684 111 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2684 Sto-Chr9 28918688 28920314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2684 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 61.404 1.46e-43 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2684 K02942 - mnt:21386797 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2684 9 28918688 28920314 Sto5g1355 5 9275939 9277466 ECH
Sto1g0745 1 7537539 7539329 Sto9g2684 9 28918688 28920314 ECH
Sto9g2684 9 28918688 28920314 Sto9g2684 9 28918688 28920314 ECH