Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2679 ATGGGGGATGTGGTGGTCAGTGCTGCTGACAAAGCACTGGAAGTGGAAGCGAAGGAGAAAGACAAGGAGAAGACAGAGGAAGAGAGTGGAACAGAGAGTAAAGGAGGAGAAATGAATGGACTGATGAGGTGGGAGAAATTCTTGCCCAGGATGATTTTGAGGGTTCTATTGGTTGAAGCTGATGATTCAACTCGTCAGATTATTTCTGCGCTTCTCAGAAAATGCAGCTACAGAGTGGCAGCTGTTCCTGACGGCTTGAAGGCATGGGAAATACTGAAAGGAAGACCACACAATATTGATCTTATACTGACAGAAGTGGATTTGCCTTCCATATCTGGCTATGCACTTCTAACACTAATTATGGAGCATGAGATTTGCAAAAATATTCCTGTTATAATGATGTCCTCACAAGATTCAATTAGCACAGTATACAAGTGCATGTTGAAAGGTGCTGCGGACTATCTTGTTAAGCCCATTAGAAAAAATGAGCTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCATCAACAATTGGTGTAAATGGTCCCTTAGACGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCTGAAAATAATGCTGCCAGTCCATCAAGTGGAGATGCAGCATGCATTCAAAAAAACAAGGAATTAATTGAGAAAGGAAGTGATGCGCAGCTGATTGCTTATTGGAAACGAGAATCCTTTCCTGAAGCAGCAGTCATATCTTTTAGGGATGATAGAGTCTCCTGCATTGACTCTTGCGTGCTTATAACTCTCCAGCTTGGAATAGTTTGGGTTGGCTACATCAGGTTTCATATTGAGACTGCATATTGTTGTCTCTTGCAGAGCTCTTGTACAAAGCCCGACTTGGAAGCTGAAAGTGCCCCGGTTGGAAATGTGCAGGAATCTGCTCATAAAAAATGTGGTGACTCATATCCAAGTGAAAAAGAGATGCAGGAGGTTGAAACGCACATTCATTTAGGCCAGATATCAATCATGCATGATAATCATGCGGGAGGATTGACTGTGGGTATCTGCAAAAATGGTGAGACGAGCACAACTCTCAGAAAGGATGGTGATCCTGAGCATCGTAGGAGTGCCAGTATTAGTGGTGAGGCTCATAACAATCACTATGTTCAAATTAGCTCTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCGTACTCATCCAAACTGCAGTCTCAAAAATTCCTCAGTTAATTGCACAGGCATGTTTGACTTCTCTCCACAATTAGATCTTTCCTTGAGAAGGTCTCATCCCAGCAACTCTGAGAATGAAGTCACTGAAGAAAGGCATACTCTTATGCATTCTGATGCTTCAGCTTTCAAGCGGTATACAACCAAACAATTGCAAGCGCCACCTACAGCTTTCATTAACTTTGGTGATCTACAGAGAGAACAGAGATCAaattgtgacaaaaatatcGCCAATGTTGCTACTGTCTATAACTCGGATAGTTCAACACCTACTATGCAGAGAAGTTTTATGTCACCCACTACAGCTCAATCTAAAGAATCTGAACTCGCAACTTCGCACTCCCAGCAGGGACATTCTCTCCCAATTCCAGTAAAAGGCATAAGGTTTAACGATCTGTGCAAAGCCTATGGTTCTGTACTTCCTCCAATGTTCAGTACACAGTCAGGTCCACCATCAATTCCAAGAAGTTCTGCTGTTCATCTTGAACCAACCTTTCAAGCTAATGCATATTATCATGCTAATATCAAGGAAAATAGTTCAGAGCAACTTTTCGAACCTCGTGGTCAAAATGGAAACAACCCCCCAAACCACGTAGTGTATTTGCAGGATCACAAATTGGAACAGGTGGAAGATCGAGGACATATCTctcctgcaactgatcaaagtGGAAGCAGTAGCTTCTGTAATGAAAATTTGAGCCGCATGAACAGCATTGGCTATGGAAGCAACTGTGGAAGTAACAGCAACGTTGATCAGGCTCCCATTGTCAGGACAGCTTCAGAAGTTAGGAACGAAGACCTCACAAACAATGCTAGTTCTCATCGGTCCATCCAAAGAGAAGCAGCTCTAAATAAGTTCCGTTTAAAAAGGAAGGAGAGATGCTATGAGAAGAAGGTTCGGTATGAAAGCAGAAAGAAACTTGCAGAGCAGCGCCCCAGAGTGAAAGGACAATTTGTTCGACAAGTGCACCCCGATCTTCAGGCACAAGGAAATGATGGCAGAGAATATGATCTTTAG 2244 0.4225 MGDVVVSAADKALEVEAKEKDKEKTEEESGTESKGGEMNGLMRWEKFLPRMILRVLLVEADDSTRQIISALLRKCSYRVAAVPDGLKAWEILKGRPHNIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLKGAADYLVKPIRKNELRNLWQHVWRRQSSTIGVNGPLDESVAQQKVEATAENNAASPSSGDAACIQKNKELIEKGSDAQLIAYWKRESFPEAAVISFRDDRVSCIDSCVLITLQLGIVWVGYIRFHIETAYCCLLQSSCTKPDLEAESAPVGNVQESAHKKCGDSYPSEKEMQEVETHIHLGQISIMHDNHAGGLTVGICKNGETSTTLRKDGDPEHRRSASISGEAHNNHYVQISSSKEAIDLIGAFRTHPNCSLKNSSVNCTGMFDFSPQLDLSLRRSHPSNSENEVTEERHTLMHSDASAFKRYTTKQLQAPPTAFINFGDLQREQRSNCDKNIANVATVYNSDSSTPTMQRSFMSPTTAQSKESELATSHSQQGHSLPIPVKGIRFNDLCKAYGSVLPPMFSTQSGPPSIPRSSAVHLEPTFQANAYYHANIKENSSEQLFEPRGQNGNNPPNHVVYLQDHKLEQVEDRGHISPATDQSGSSSFCNENLSRMNSIGYGSNCGSNSNVDQAPIVRTASEVRNEDLTNNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDLQAQGNDGREYDL 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2679 747 MobiDBLite consensus disorder prediction 355 372 - -
Sto9g2679 747 MobiDBLite consensus disorder prediction 16 37 - -
Sto9g2679 747 Pfam CCT motif 688 730 IPR010402 GO:0005515
Sto9g2679 747 PANTHER TWO-COMPONENT RESPONSE REGULATOR 280 720 IPR045279 GO:0009736
Sto9g2679 747 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 222 IPR045279 GO:0009736
Sto9g2679 747 MobiDBLite consensus disorder prediction 496 528 - -
Sto9g2679 747 ProSiteProfiles Response regulatory domain profile. 54 172 IPR001789 GO:0000160
Sto9g2679 747 Coils Coil 8 28 - -
Sto9g2679 747 MobiDBLite consensus disorder prediction 713 727 - -
Sto9g2679 747 MobiDBLite consensus disorder prediction 713 747 - -
Sto9g2679 747 SUPERFAMILY CheY-like 53 176 IPR011006 -
Sto9g2679 747 SMART REC_2 53 168 IPR001789 GO:0000160
Sto9g2679 747 MobiDBLite consensus disorder prediction 354 374 - -
Sto9g2679 747 Pfam Response regulator receiver domain 55 166 IPR001789 GO:0000160
Sto9g2679 747 MobiDBLite consensus disorder prediction 16 33 - -
Sto9g2679 747 Gene3D - 51 241 - -
Sto9g2679 747 ProSiteProfiles CCT domain profile. 688 730 IPR010402 GO:0005515
Sto9g2679 747 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 14 222 - -
Sto9g2679 747 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 280 720 - -
Sto9g2679 747 CDD psREC_PRR 55 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2679 Sto-Chr9 28893962 28898305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2679 384 732 Response Regulator Gene Family AT5G24470 32.493 6.82e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Sto9g2679 Response_reg 3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2679 K12130 - gmx:100777119 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2679 9 28893962 28898305 Sto9g2679 9 28893962 28898305 ECH