Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2675 ATGGATAATTCCACCCAAGAATCCCACCTCAGATCCGAAAATTCTGTAACCTATGAGTCCCCTTACCCTCTCTACGCCATGGCCTTCTCTTCTACCCCTCCCCTTCCCTCTTCCCACCAGCGTATTGCAGTTGGTAGCTTCATTGAAGACTACACTAATCGCGTTGATATCCTCTCCTTCAACCCTGATTCTCTCTCCATTAGACCCCACCCTTCCCTCTCCTTCGACCACCCCTACCCTCCCACTAAGCTTATGTTCCACCCAAACGCTCACTCTTCTCTCCGAAAGTCCTCCTCCGACCTCCTCGCCACATCCGGTGACTACCTCCGCCTCTGGGAAGTTCGGGAAAATTCCGTCGACACAATTTCGCTTCTCAACAACAGCAAGACCAGCGAGTTCTGCGCCCCGTTGACCTCCTTCGATTGGAACGACATCGAGCCCAAGAGAATCGGCACTTCGAGTATCGACACTACGTGTACGATTTGGGATATCGAGAAAGGGGTGGTTGAGACGCAGCTAATTGCGCACGATAAAGAGGTTTACGATATTGCTTGGGGTGAGGCTAGAGTGTTCGCGTCTGTATCAGCGGATGGGTCCGTTAGAATCTTCGATCTGAGGGACAAAGAGCACTCGACGATTATATACGAGAGTCCTCAGCCGGATACGCCGTTGCTTAGGTTGGCTTGGAATAAGCAGGATTTGAGGTACATGGCTACTATTCTGATGGACAGCAATAGGATTGTGATTTTGGATATTAGGTCACCGACGATGCCAGTGGCGGAGTTGGAGAGGCATCGTAGTAGCGTGAATGCCATTGCTTGGGCTCCCCAGAGTTATAGGCATATTTGTTCGGCAGGGGATGATTCACAGGCTCTTATATGGGAATTGCCTACTGTGGCTGGGCCTAATGGAATAGATCCCATGTCCATGTATTCTGCTGCTACTGAAATTAATCAATTGCAGTGGTCTGCTGCTCAGCCTGACTGGATTGCTATTGCTTTTGCAAACAAGATGCAGCTTTTGAAGGTTTGA 1032 0.499 MDNSTQESHLRSENSVTYESPYPLYAMAFSSTPPLPSSHQRIAVGSFIEDYTNRVDILSFNPDSLSIRPHPSLSFDHPYPPTKLMFHPNAHSSLRKSSSDLLATSGDYLRLWEVRENSVDTISLLNNSKTSEFCAPLTSFDWNDIEPKRIGTSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNRIVILDIRSPTMPVAELERHRSSVNAIAWAPQSYRHICSAGDDSQALIWELPTVAGPNGIDPMSMYSAATEINQLQWSAAQPDWIAIAFANKMQLLKV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2675 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Sto9g2675 343 Gene3D - 3 342 IPR015943 GO:0005515
Sto9g2675 343 PANTHER WD REPEAT CONTAINING PROTEIN 1 343 IPR045159 -
Sto9g2675 343 SUPERFAMILY WD40 repeat-like 22 299 IPR036322 GO:0005515
Sto9g2675 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Sto9g2675 343 Pfam WD domain, G-beta repeat 259 294 IPR001680 GO:0005515
Sto9g2675 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 296 - -
Sto9g2675 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Sto9g2675 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Sto9g2675 343 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 343 IPR031104 -
Sto9g2675 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Sto9g2675 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Sto9g2675 343 SMART WD40_4 68 113 IPR001680 GO:0005515
Sto9g2675 343 SMART WD40_4 121 163 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2675 Sto-Chr9 28877513 28878544 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2675 K11805 - zju:107407644 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0534 5 3399247 3400311 Sto9g2675 9 28877513 28878544 CCT
Sto9g2675 9 28877513 28878544 Sto9g2675 9 28877513 28878544 ECH