Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2668 ATGGGTGCCGTCGTCGACTATTATCCGCCTCGGGCGGATGAGGTGGCGGTTTTGCCTCTCAATTCCCTTCCTCTAGGGTTCAGATTTAGGCCCACCGATGAGGAGCTGGTTGATTACTATCTGCGACAAAAGATCAACGGAAATGGGGACGATGTTTGGGTTATCCGAGAAATTGATGTTTGCAAATGGGAGCCATGGGATTTGCCTGATTTATCGGTTATACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCCCAGGATCGCAAATATCCTAATGGACATCGATTGAACCGAGCTACAACACATGGGTATTGGAAGGCAACTGGAAAAGATCGCAGAATTAAGTCTGGATCGAGCTTGATTGGAATGAAGAAGACTTTGGTGTTCTATACTGGTCGTGCACCAAGAGGGAAGAGAACCAATTGGGTTATGCATGAGTACCGTCCTACCCTGAAGGAGCTTGATGGTACCAATCCTGGACAGAGTCCATATGTCCTTTGTCGTCTATTTAAGAAGCAAGATGAGACTCTTGAAGGTTCAAACTGTGATGAAGTGGATCGGACTGTGTCAACTCCAACAACTGCTAATTACTCTCCAGAAGAAATACAGTCTAATGTAGCTCCAATTGCAGCTTCTCCGTCACTAGCTACAGAAGATGATAAGAAGAGGGCAGTTCCATTCTGTTTCTCTGAGAATTCTGAGGATGCCACATCCAACATTATAACGCCTATTGATTGCAACAGTGAAGAATGTGATACTAGTGAAGTACAAAATAATATTGTTATTCCAACAACAGCTGAGGAGGATCAGCTTCTGAACTTTGACATATTTTATGATCCAACAACTGAACCATTGGACGACAAACTGTTCTCCCCTGTACATGTGCATATGCCACCAGAATTTTATTTTCCAGCCAGCAATGAATCAGATAATTGTTATGGGCTGCAACATCAGTATGGTACGAATGATGTTACTGAATTTTTGAACTCAGTTGTTAATTGGGATGAGTTGTCCTATGATTCCAGCTGTCCAAATCCTACCTCCACATTGATTGATGTCAAGGATAATGGATCAGGCAGTGATTCAGATGTGGAAATGTCCAATGCACAGAGTCTACAAGCATTACATGCTGCATATCCTGAGGAAGCAATTGACAGAAAGGCTTCTATAAAGTTGGAGACAAGTCCACAATTTCTCAGCTCCACCTCCTCTGATCTTGTTGGTGATGAGCAGAAGAGCAATATAGAATTATTGCCAAACTATGGTTCAGTTGTTAGTGGTGATAATGGAACTGGTATTAAAAGAAGGACTCGCCAAGAACGGAATGACTCTCCAAACATTAACCTTGTGGACCAAGGTACTGCACCAAGAAGAATACGACTGCAACGTAAATTTCAAGTGCATCCTCTTAACTCCAATGAGGTAGTGAAAACTGGGAGTTGTGCACCAGAAGACCATGATTCAGAGTCAATCATTGCAGAGGAGACAAAAGCTTCAGAAAATCAAGCTATTGATGCTAAGGTTGTAGATGAACCCCAGAAGACATCTCCCAAATCAGCTAACATTACTGAGAATTCTCAGCAACATGCTGCAAATGCATGCTCCGCCTCGAAGTTGAGAGACATTTTGCTGTGTACAAAGCTCCGTTTTACATCAAAAGCTTCCTCCAACCGCACAATGTGTTCCAAGGATCACATCCATACCTACGCCGAAGAGATTCTAAGCGCAGCTCAGCAAAACAAAGATTGGTTAATATCAGTGCGAAGGCAAATTCATGAGTATCCAGAACTCGCTTTCCAAGAGCACAACACAAGTGCTCTTATTCGCACCCAACTCGATCAACTCGGCATCCCTTACTCCTACCCTATCGCCAAGACCGGCATCCTTGCCCAAATTGGCTCTGGTTCTCCTCCCATTGTCGCTCTTCGTGCTGACATGGATGCCCTCCCTTTGCAGGAATTGGTTGAGTGGAACCACAAGAGCAAAATTGATGGCAGAATGCATGCATGCGGCCACGATGCTCACACCACCATGCTGCTTGGTGCTGCTAAATTGCTTAGTCAACGCAAACACAAACTTCAGCTCATGTCTAAGAAAATTGCTCTGAAGatttccctcttttcttttggaATTTTGAAGGGAACTGTGAGACTTCTTTTCCAACCTGCTGAGGAGGGAGCTCTTGGTGCCTCTCAAATGATTAAAGAAGGAGCACTTCAAGATGTGGAAGCAATTTTTGGCTTGCATGTCGATTATAAAACACCCACAGGAGCCATAGCATCTATTTCTGGACCTTTCTCAGCTGCTGGGTGCGTTTTTGCAGCAAAAATAATAGGAAAAGGTGGGCATGCTGCTGCACCCCACAAAAATGTGGATCCAGTGCTGGCTACATCATTTGCAATATTGGCATTGCAACAGCTTGTTTCAAGAGAAATTGATCCCCTTCATAGTCAAGTGATATCAATTACTTATGTCAAAGCTGATAATGCACTAAACGTAATTCCATCCTATGTTGAGTTTGGTGGAACTTTAAGGAGTCAGACGACAGAAGGCATGTACCATTTCAGGCAGCGAATAAAGGAGGTAATTGAAGGACAAGCAGCAGTGCATAGATGCAATGCACATATAGATATGCTAGATGAATACTTGACTCCATACCCTGCTGTTGTGAATGATGATAGCTTACACTTGCATGTGAAGAGGGTTGGCCAACTCCTTCTTGGTCCTGAAAATGTGAAGGAGGCCAAGAGAGTCATGGCAGGTGAAGACTTTGCATTTTATCAACAAGTGATTCCTGGAGCTATGTTTGGCATTGGAATTGGAAATGAAGAAGTGGGAGCAATCCACTCTCCTCACtctccttttttctttcttgatgaGGAAGTTCTTCCAGTAGGGGCTGCATTGCACACTGCAATTTCTGAGTTATACTTAGAGGAGCATCAACATTCCACTGTCCAGTAA 2967 0.4317 MGAVVDYYPPRADEVAVLPLNSLPLGFRFRPTDEELVDYYLRQKINGNGDDVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGSSLIGMKKTLVFYTGRAPRGKRTNWVMHEYRPTLKELDGTNPGQSPYVLCRLFKKQDETLEGSNCDEVDRTVSTPTTANYSPEEIQSNVAPIAASPSLATEDDKKRAVPFCFSENSEDATSNIITPIDCNSEECDTSEVQNNIVIPTTAEEDQLLNFDIFYDPTTEPLDDKLFSPVHVHMPPEFYFPASNESDNCYGLQHQYGTNDVTEFLNSVVNWDELSYDSSCPNPTSTLIDVKDNGSGSDSDVEMSNAQSLQALHAAYPEEAIDRKASIKLETSPQFLSSTSSDLVGDEQKSNIELLPNYGSVVSGDNGTGIKRRTRQERNDSPNINLVDQGTAPRRIRLQRKFQVHPLNSNEVVKTGSCAPEDHDSESIIAEETKASENQAIDAKVVDEPQKTSPKSANITENSQQHAANACSASKLRDILLCTKLRFTSKASSNRTMCSKDHIHTYAEEILSAAQQNKDWLISVRRQIHEYPELAFQEHNTSALIRTQLDQLGIPYSYPIAKTGILAQIGSGSPPIVALRADMDALPLQELVEWNHKSKIDGRMHACGHDAHTTMLLGAAKLLSQRKHKLQLMSKKIALKISLFSFGILKGTVRLLFQPAEEGALGASQMIKEGALQDVEAIFGLHVDYKTPTGAIASISGPFSAAGCVFAAKIIGKGGHAAAPHKNVDPVLATSFAILALQQLVSREIDPLHSQVISITYVKADNALNVIPSYVEFGGTLRSQTTEGMYHFRQRIKEVIEGQAAVHRCNAHIDMLDEYLTPYPAVVNDDSLHLHVKRVGQLLLGPENVKEAKRVMAGEDFAFYQQVIPGAMFGIGIGNEEVGAIHSPHSPFFFLDEEVLPVGAALHTAISELYLEEHQHSTVQ 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2668 988 CDD M20_IAA_Hyd 585 979 IPR044757 GO:0009850|GO:0016787
Sto9g2668 988 Gene3D Zn peptidases 585 964 - -
Sto9g2668 988 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Sto9g2668 988 TIGRFAM amidohydrolases: amidohydrolase 585 967 IPR017439 GO:0016787
Sto9g2668 988 Gene3D - 769 887 - -
Sto9g2668 988 SUPERFAMILY Zn-dependent exopeptidases 572 979 - -
Sto9g2668 988 SUPERFAMILY Bacterial exopeptidase dimerisation domain 770 888 IPR036264 -
Sto9g2668 988 PANTHER PEPTIDASE M20 FAMILY MEMBER 560 986 IPR017439 GO:0016787
Sto9g2668 988 Pfam Peptidase family M20/M25/M40 642 972 IPR002933 GO:0016787
Sto9g2668 988 Pfam Peptidase dimerisation domain 776 868 IPR011650 -
Sto9g2668 988 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Sto9g2668 988 SUPERFAMILY NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Sto9g2668 988 ProSiteProfiles NAC domain profile. 23 173 IPR003441 GO:0003677|GO:0006355
Sto9g2668 988 MobiDBLite consensus disorder prediction 421 448 - -
Sto9g2668 988 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 3 560 986 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2668 Sto-Chr9 28826197 28832703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2668 15 514 NAC Transcription Factor Family AT4G35580 41.683 4.02e-98 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto9g2668 Peptidase_M20 6.5e-26 CL0035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2668 K14664 - gmx:100778903 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2668 9 28826197 28832703 Sto5g1377 5 9419653 9429144 ECH
Sto9g2668 9 28826197 28832703 Sto9g2668 9 28826197 28832703 ECH