Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2666 ATGAAGATAAGAAGCTTTGCTGCTGGCATAACAAAACCTAGTTTTTTGCTAGCACAAACAGAAATGCCTATTCTAGCATTTGGTCACTCTAAGTTGAGTCCTTCATTAACTCTTCAGTTACCTTGTCATTGCCTGAGAAGGATGGGTTTGGTTACAAAACTAAAGTATTCTGTTGCTGATAGAACATATACTTCTAGGTCTGTAGGTTTACCCACATCCAAACCCGAATCCCCTCGCTTGAATAGGAAACGAGGAGGTTCGTCTTCATTATATAGTCGTCCTAGTTTATCAGAtatgaaaaaggagaaaatggCAAACCGTGAGAAGGTTTATGAATTCTTGCGGGGGATTGGTATTATTCCTGATGAGCTTGATGGTCTGGAACTTCCAGTAACAGTTGAAGTTATGAGGGAGCGAGTAGATTTTCTTCACAATTTAGGGCTTACAATCGAAGACATCAACAATTATCCACTAGTTCTTGGCTGTAGTGTCAAAAAGAATATGATTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCCACATTCACACAGTTCTTGCAGAGATACCCTCAAGTCCTTCATGCTAGTGTTGTTGTTGACCTTGAGCCAGTGGTGAAGTATCTCCAGGGGATGGATATCAAGCCCAATGATATACCCCGGGTTCTTGAGACATATCCAGAAGTGCTAGGATTCAAGCTTGAGGGAACGATGAGCACATCAGTTGCTTATTTGGTTGGCATCGGTGTAGGAAGAAGAGAAATCGACAGAGACAGAGAGCCAGCGATGAAGACCATACTTTCTTCCGAAACTATGGACATCCCCGAGGGGGTAACCATCAAGGTGCACGCCAAGATCATCGAGGTTGAGGGACCTCGCGGCAAGCTTGTCCGTGATTTTAAGCATCTGAATCTCGACTTTCAGCTTATTACAGACGAGAATGGCAAGAAGAGGCTCAAAGTTGAATCGTGGTTTGGGTCTCGTAAAACCTCTGCCGCCATTCGCACTGCTCTGAGTCACGTGGAAAATCTGATCACCGGCGTCACCAAAGGTTACCGCTACAAGATGCGGTTCGTCTATGCTCATTTTCCCATCAACGCCAGCATCACCAATAGCAGTAAGTCCATTGAGATCCGAAACTTCTTGGGAGAAAAGAAGGTAAGGAAAGTTGATATGCTCGAGGGTGTTTCAATTCTAAGATCTGAAAAGGTGAAGGATGAGTTGATATTGGATGGAAATGATATCGAGCTAGTTTCTCGGTCTTGTGCCCTCATCAACCAGAAATGCCATGTCAAAAATAAAGATATCCGGAAGTTCCTTGATGGTATCTACGTTAGCGAGAAGGGGACAATAGCCGAAGAATAG 1371 0.4318 MKIRSFAAGITKPSFLLAQTEMPILAFGHSKLSPSLTLQLPCHCLRRMGLVTKLKYSVADRTYTSRSVGLPTSKPESPRLNRKRGGSSSLYSRPSLSDMKKEKMANREKVYEFLRGIGIIPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLQRYPQVLHASVVVDLEPVVKYLQGMDIKPNDIPRVLETYPEVLGFKLEGTMSTSVAYLVGIGVGRREIDRDREPAMKTILSSETMDIPEGVTIKVHAKIIEVEGPRGKLVRDFKHLNLDFQLITDENGKKRLKVESWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSSKSIEIRNFLGEKKVRKVDMLEGVSILRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIAEE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2666 456 Pfam mTERF 172 259 IPR003690 GO:0003690|GO:0006355
Sto9g2666 456 Gene3D - 270 353 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 MobiDBLite consensus disorder prediction 66 103 - -
Sto9g2666 456 Pfam Ribosomal protein L6 276 353 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 Pfam Ribosomal protein L6 366 444 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 Gene3D - 354 456 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 SUPERFAMILY Ribosomal protein L6 265 353 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Sto9g2666 456 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Sto9g2666 456 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Sto9g2666 456 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Sto9g2666 456 ProSitePatterns Ribosomal protein L6 signature 2. 429 450 IPR002359 GO:0003735|GO:0005840|GO:0006412
Sto9g2666 456 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 265 456 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 PANTHER 60S RIBOSOMAL PROTEIN L9-LIKE 265 456 - -
Sto9g2666 456 SUPERFAMILY Ribosomal protein L6 354 450 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Sto9g2666 456 Gene3D Transcription termination factor 3, mitochondrial 136 269 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2666 Sto-Chr9 28804583 28818871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2666 265 456 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 84.974 1.60e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sto9g2666 mTERF 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2666 K15032 - gmx:100785223 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2666 9 28804583 28818871 Sto9g2666 9 28804583 28818871 ECH