Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2637 ATGGAAACATCGGCTGCTAATTCAGAACAATAcgctatttcttcttcttcctcctcttcatcTACCGGAGCTGTAAATAATAGTAACAGTGATAGCATTGCCCGTACTGAGACATGGTATGGCATGAGGTTACCCCCTATCAGCCCCTTCCGTTCTCCAATTTCCTTTCTATTGAATTACGCCGGCATTCTCCGCTCCACTTCGTCAACACATGATTCTGAGGCTCTGGCACTCGACGACGGAGTTTCCACTTCTGAATTACGCTCACAGCTTTCTGATTCTGGCGCCGCGTGCAGTGGCAGTACTGGGGAAGTTTCCATACGAATCATTGGAGCTGGAGAACAAGAGCACAGTATTGGGTTAGgttctttctcttctcctcctcAGAATCAGCCTGGAGAAGTCGATCGTGATGAGTTGATGAGAAATAGAGGAGGAATGCCTGCATTGGATGACGATGCTGAGGCAAGCAGTGGTAGAGTCCCTCTAGTGTCTTCATCCACATCCGCCGCAAGTGGACAGGTGGATGAAGATGCTGGGAATGGCTTGGAAAATAACAGCAGGGACTCGTCTTCTTACCAGAGGTATGATATTCAGCAGGTTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGTTGTTGGTTGTTTTCATTCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGGTTTCAGCCGTCATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCGCTAAAGGGAGATAGGAACGTCCTTATTCTTGTTGGTATCTCTGTTGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAAATGAAGATCTCTTATACCCACTGGTCATGCTTCCTCCAAATTCAGCTCCTCCTTTCTGGCATGCTATATTCATCATTTTGGTTAAtgATACACTAGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCtgcttatatattataaaaatggaAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTACACGCTGCTGTTGTATCGTACCTTGTTGCCAACACCAGTTTGGTATCGGTTTTTCTTAAACAAGGATTATGGAAGTCTCTTTTCATCACTGACCACAGGATTGTATTTGACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAGTGTTTCTTTTCTGCCATAAAAGCATTATCAAGAAAAGAGATTCATTATGGAATTTATGCCACAATGGAACAGGTAAATGCTGCTGGTGACCTATGTGCTATATGCCAAGAGAAGATGCATGCCCCAGTTTTGTTGCGCTGCAAACACATTTTCTGCGAGGAGTGTGTATCAGAATGGTTCGAGAGAGAAAGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCCGCCGACCTACGGACCTTTGGGGATGGATCAACAAGTCTAATTTTCCAGTTGTTCTAA 1464 0.4255 METSAANSEQYAISSSSSSSSTGAVNNSNSDSIARTETWYGMRLPPISPFRSPISFLLNYAGILRSTSSTHDSEALALDDGVSTSELRSQLSDSGAACSGSTGEVSIRIIGAGEQEHSIGLGSFSSPPQNQPGEVDRDELMRNRGGMPALDDDAEASSGRVPLVSSSTSAASGQVDEDAGNGLENNSRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWVSAVMFKSNEIVKKQTALKGDRNVLILVGISVAFMLHVMCIYWWYRNEDLLYPLVMLPPNSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRTLLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFFSAIKALSRKEIHYGIYATMEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLIFQLF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2637 487 Pfam Zinc finger, C3HC4 type (RING finger) 424 467 - -
Sto9g2637 487 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 2 487 IPR044235 GO:0061630|GO:1904294
Sto9g2637 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 474 IPR013083 -
Sto9g2637 487 ProSiteProfiles Zinc finger RING-type profile. 426 464 IPR001841 -
Sto9g2637 487 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Sto9g2637 487 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 487 - -
Sto9g2637 487 CDD RING-HC_RNFT1_like 425 464 - -
Sto9g2637 487 MobiDBLite consensus disorder prediction 118 190 - -
Sto9g2637 487 MobiDBLite consensus disorder prediction 135 149 - -
Sto9g2637 487 MobiDBLite consensus disorder prediction 1 31 - -
Sto9g2637 487 SUPERFAMILY RING/U-box 415 469 - -
Sto9g2637 487 SMART ring_2 426 463 IPR001841 -
Sto9g2637 487 MobiDBLite consensus disorder prediction 160 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2637 Sto-Chr9 28641430 28646484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2637 51 487 C3H Transcription Factor Family AT5G01960 64.612 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2637 - K22379 nnu:104612968 601.668