Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2634 ATGGTGATAACCAATGATGTAGGACCTGCAAGGTGTTATCGGCAAATTAAAAACAAGCCATATCCCAAATCACGCTTTTGCCGTGGTGTTCCCGATCCCAAGATCAGAATTTATGATGTTGgaatgaagaagaagggtgTTGACGAGTTCCCATTTTGCGTCCATCTTGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAAGCACTTGAAGCTGCTAGGATTGCTTGCAACAAATATATGGCCAAATTTGCTGGAAAGGATGCATTCCATTTGAGAGTCAGGGTCCATCCATTCCATGTTCTCAGGATTAATAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGGTGCCTTTGGAAAGCCTCAAGGTACATGTGCAAGAGTTGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGCAAGGACAGCAACAGTCATCATGCCCAGGAAGCCCTTCGTCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATCATCGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACCGAACTGATTATCTGAAATACAAGTCAGAGAACAGGATTATGCCAGATGGTGTGAATGCGAAGCTTCTTGGATGTCATGGACCATTGGCTAACCGTCAACCTGGCAGAGCTTTCCTGCAATCAGCAACTGCTTAG 678 0.441 MVITNDVGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKYKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLQSATA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2634 225 Pfam Ribosomal protein L16p/L10e 16 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto9g2634 225 ProSitePatterns Ribosomal protein L10e signature. 112 133 IPR018255 GO:0003735|GO:0005840|GO:0006412
Sto9g2634 225 CDD Ribosomal_L16_L10e 45 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Sto9g2634 225 SUPERFAMILY Ribosomal protein L16p/L10e 9 177 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto9g2634 225 TIGRFAM uL16_euk_arch: ribosomal protein uL16 9 178 IPR001197 GO:0003735|GO:0005840|GO:0006412
Sto9g2634 225 Gene3D Ribosomal protein L10e/L16 7 221 IPR036920 GO:0003735|GO:0005840|GO:0006412
Sto9g2634 225 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 9 222 - -
Sto9g2634 225 PANTHER 60S RIBOSOMAL PROTEIN L10 9 222 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2634 Sto-Chr9 28629891 28631037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2634 9 224 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.111 2.35e-141 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2634 K02866 - pvy:116105818 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1408 5 9645117 9646207 Sto9g2634 9 28629891 28631037 CCT