Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2624 ATGGATAAGGATTTGCTCAGATTGTATGAAGCGGTGAAGAAGGCAGCGGATGCGGCCAGCTCCACCGATGGCGAAGCTGAAGAGACTCGATGCCTTGATGCGTTCGAGCAGCTGAAGAAGTTCCCCGTCAATTATCAAATTCTTGTTTCCACCCAGGTTGGCAAACATTTGAAAGTTCTAACGAAACATCCGAGAAAGAAAATACGGGCTTTTGCTCTTGACCTGATTGAAATATGGAAAGACATAATTATCAAGGAAACAAGCAAAAATAAGAATGGGAGCTCAAACAACAATGTTGGGTCCACAGATGGGGAGAATGCTAAAGCTGACAAGTTTCAGAGGTCGAATTCGGTAAAGGTTGAGAAGGTTTCAAAGGCTGATATTGTCAAGGTTGAGAAAAGTGATAGGAATGGTACGTCAAGCTCAGAAAATGTAAGGAGGATACAAGTTTCAGATGTCAAAAGTGAAAAAACTGTTTCTGCAGCAAATGTTAAGGTAGAAAAGACAGCCAAGGATGAGAAGCAAGTTTCTGGAGTGAAGAAGACATCCTCGAGCCCTGCTGCTCCACCTAAGTTGAAAACTATGATTAAATCTAATGATGTGATGCGTGACAAAATAAGGGAGATTCTCCAAGAGGCTTTCTCTAAGGTTTTTGGAGAGGCTGACGAAACACTCGTGGATGAGGTTAATGCTTCTGACCCTATCCGGGTTGCTGTTACAGTGGAGTCCAAATTATTTGAGAAGTGGGGTCCTTCTAATGGGGCTCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTCAAGGATCCGAATAATCCAGATTTTCGGAGAAAAGTTCTACTTGGAGAACTTCAACCTGAGCGGCTGATCAACATGAGCACTGCAGAAATGGCTAGTGAACAGAGGAAGCAGGAGAATGAGAAACTGAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGACAGCAACCAAAAGCCACAACTGATCAATTCAAGTGTGGTCGATGTGGTCAAAGGAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACGTGTGTAGCATGTGATAACCGTTGGAAGTTCTGTTAG 1113 0.4313 MDKDLLRLYEAVKKAADAASSTDGEAEETRCLDAFEQLKKFPVNYQILVSTQVGKHLKVLTKHPRKKIRAFALDLIEIWKDIIIKETSKNKNGSSNNNVGSTDGENAKADKFQRSNSVKVEKVSKADIVKVEKSDRNGTSSSENVRRIQVSDVKSEKTVSAANVKVEKTAKDEKQVSGVKKTSSSPAAPPKLKTMIKSNDVMRDKIREILQEAFSKVFGEADETLVDEVNASDPIRVAVTVESKLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRKVLLGELQPERLINMSTAEMASEQRKQENEKLKQKALFECERGQQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVACDNRWKFC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2624 370 SMART Cys4_2 330 369 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto9g2624 370 Pfam Transcription factor S-II (TFIIS), central domain 199 316 IPR003618 GO:0006351
Sto9g2624 370 Pfam TFIIS helical bundle-like domain 36 83 IPR017923 -
Sto9g2624 370 ProSiteProfiles Zinc finger TFIIS-type profile. 328 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto9g2624 370 TIGRFAM TFSII: transcription elongation factor S-II 16 370 IPR006289 GO:0003676|GO:0005634|GO:0006368
Sto9g2624 370 SMART mid_6 204 308 IPR003618 GO:0006351
Sto9g2624 370 ProSitePatterns Zinc finger TFIIS-type signature. 332 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto9g2624 370 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 98 IPR035441 -
Sto9g2624 370 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 370 - -
Sto9g2624 370 Coils Coil 292 312 - -
Sto9g2624 370 SMART TFS2_5 8 85 IPR003617 GO:0005634
Sto9g2624 370 CDD TFIIS_I 9 83 - -
Sto9g2624 370 ProSiteProfiles TFIIS N-terminal domain profile. 10 86 IPR017923 -
Sto9g2624 370 MobiDBLite consensus disorder prediction 89 118 - -
Sto9g2624 370 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 370 - -
Sto9g2624 370 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 100 IPR035441 -
Sto9g2624 370 Gene3D - 181 298 IPR036575 GO:0006351
Sto9g2624 370 MobiDBLite consensus disorder prediction 172 191 - -
Sto9g2624 370 MobiDBLite consensus disorder prediction 89 104 - -
Sto9g2624 370 Pfam Transcription factor S-II (TFIIS) 330 368 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sto9g2624 370 CDD Zn-ribbon_TFIIS 323 369 - -
Sto9g2624 370 PIRSF TFIIS 2 370 IPR035100 -
Sto9g2624 370 SUPERFAMILY Elongation factor TFIIS domain 2 187 300 IPR036575 GO:0006351
Sto9g2624 370 ProSiteProfiles TFIIS central domain profile. 202 325 IPR003618 GO:0006351
Sto9g2624 370 SUPERFAMILY Zinc beta-ribbon 309 368 - -
Sto9g2624 370 Gene3D - 299 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2624 Sto-Chr9 28562003 28564544 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sto9g2624 TFIIS_M 4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2624 K03145 - gmx:100811982 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2624 9 28562003 28564544 Sto5g1415 5 9689809 9696575 ECH
Sto9g2624 9 28562003 28564544 Sto9g2624 9 28562003 28564544 ECH