Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2611 ATGGCTCTTCCAGCATTCTCTGctatctctcttcttttctttgttcTTAACATTTGCCTTGAAGGCACTTATGGTGACAATGGAGGTTGGCAAGGTGGTCATGCCACATTTTATGGTGGAGGAGACGCATCCGGCACAATGGGGGGAGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGCACAAACACAGCAGCATTAAGCACAGCTCTATTCAACAGTGGCCTAAGCTGTGGTTCTTGCTACGAAATGCGATGTGACAGTGACCCTAAATGGTGCCTCCCCGGTAGCATCACCGTCACTGCCACCAACTTTTGCCCTCCTAACTATGGCTTGTCTAATGACAATGGTGGATGGTGCAATCCTCCTCTTCAACACTTCGATCTCGCCGAGCCGGCTTTCTTACAGATTGCTCAGTACAGAGCTGGCATTGTCCCTATTTCCTTCAGAAGAGTGCCCTGTGTGAAGAAAGGAGGGATCAGATTCACCATCAATGGTCACTCATACTTCAATTTGGTTCTGATCTCCAATGTTGGAGGAGCAGGGGATGTTCATTCTGTGTCAATCAAGGGTTCTAAGACTGGGTGGCAATCCATGTCAAGAAATTGGGGACAGAACTGGCAGAGCAACTCTTACCTTAATGGTCAGAGTCTTTCATTTCAGGTCACTACTAGTGATGGCAGAACTGTTACTAGCTACAACGTTGTACCTGTAGTTAACAGGACTAGTACCTTCTGCATTTCTGATTCAATAGAATGTGGCAGGTGTCTAATGGTGGCTAAATACCACCTCCAGGCTTCCATGGCTTCTGCAACCACAGCTTCAGAAGGATTTACTGCAGAAGGTCGGAAAGGTATAATCACATCAGCTGGCAGGATATTTGATTTCCCTTCAGACAAAACTAGAATTTGGACATCAGTTGCCATTTCCATTTTATAA 942 0.4522 MALPAFSAISLLFFVLNICLEGTYGDNGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEMRCDSDPKWCLPGSITVTATNFCPPNYGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPISFRRVPCVKKGGIRFTINGHSYFNLVLISNVGGAGDVHSVSIKGSKTGWQSMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNVVPVVNRTSTFCISDSIECGRCLMVAKYHLQASMASATTASEGFTAEGRKGIITSAGRIFDFPSDKTRIWTSVAISIL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2611 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Sto9g2611 313 Gene3D - 17 155 IPR036908 -
Sto9g2611 313 SUPERFAMILY Barwin-like endoglucanases 12 178 IPR036908 -
Sto9g2611 313 PANTHER EXPANSIN 4 239 - -
Sto9g2611 313 PANTHER EXPANSIN-A15 4 239 IPR002963 GO:0009664
Sto9g2611 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 238 IPR007117 -
Sto9g2611 313 SMART dpbb_1 65 150 IPR007112 -
Sto9g2611 313 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Sto9g2611 313 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Sto9g2611 313 Gene3D - 160 250 IPR036749 -
Sto9g2611 313 Pfam Lytic transglycolase 65 149 IPR009009 -
Sto9g2611 313 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Sto9g2611 313 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Sto9g2611 313 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Sto9g2611 313 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Sto9g2611 313 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Sto9g2611 313 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Sto9g2611 313 SUPERFAMILY PHL pollen allergen 157 238 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2611 Sto-Chr9 28484161 28488547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2611 1 238 Expansin Gene Family AT2G40610 81.172 5.07e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2611 - K20628 zju:107414006 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2281 9 26198038 26199522 Sto9g2611 9 28484161 28488547 ECH
Sto5g4399 5 52535516 52536437 Sto9g2611 9 28484161 28488547 ECH
Sto9g2611 9 28484161 28488547 Sto9g2611 9 28484161 28488547 ECH