Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2580 ATGGCCATTTACAGAGCATTAAAACATTCTAAAGCAGATCATACTCATTCAGATCTAATTGTTAAGAGTGGAAATACTGTTCATTCGATTTGCTCTAATATCATCTCACTGCCCTTGGATTCTTCTAGAAAGAGGAAAAGTCGAAGTCGGCGGGACGGTTCCAAATCTGTGGCTGAGACTTTGGCGAAGTGGAGAGAATATAATGAGCATATTGGATCTTCTAAAGTTGAGAGTAAACCAACTCGCAAAGCTCTAGCCAAGGGTTCAAAGAAAGGGTGCATGAAAGGTAAAGGGGGGCCTGACAACTCAAGATGTAACTACAGAGGCGTTAGGCAAAGAACGTGGGGAAAATGGGTTGCTGAGATTAGAGAGCCAAATAGAGGAAGTAGGCTTTGGTTGGGTACCTTCTCTACTGCTTATGAAGCTGCTCTTGCATATGATGAAGCGGCCAGAGCTATGTATGATCCTTGTGCCCGCCTCAACTTCCCTCACATATCAGACTATACTTCTTGCAAGGAGTCACTAAAGGAATCTTCTTCAGCTACAACTTTTTCAAGTTCTTCAGTGACAACCCCTGTAAGCTCCGACACAACTACTATGTCGAACCATTCAGAGGTATGTGCAGTTGAAGATGTGAAGACGAACTTTCAACCTAACACAATAAATGAGAgggaaagagatagagataggGCTAATGTCCATCCTGATGCTGATGAAGTTGCCTCTGCAATTGTCAAAGTGAAGTCAGAGCCGAAACTTGAGCCTGTGCCTGTCGATGCCGATCTCCTACATCATGAGGGCTAA 804 0.4266 MAIYRALKHSKADHTHSDLIVKSGNTVHSICSNIISLPLDSSRKRKSRSRRDGSKSVAETLAKWREYNEHIGSSKVESKPTRKALAKGSKKGCMKGKGGPDNSRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFSTAYEAALAYDEAARAMYDPCARLNFPHISDYTSCKESLKESSSATTFSSSSVTTPVSSDTTTMSNHSEVCAVEDVKTNFQPNTINERERDRDRANVHPDADEVASAIVKVKSEPKLEPVPVDADLLHHEG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2580 267 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Sto9g2580 267 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Sto9g2580 267 MobiDBLite consensus disorder prediction 72 105 - -
Sto9g2580 267 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Sto9g2580 267 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 39 227 - -
Sto9g2580 267 MobiDBLite consensus disorder prediction 220 237 - -
Sto9g2580 267 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 39 227 - -
Sto9g2580 267 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Sto9g2580 267 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Sto9g2580 267 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Sto9g2580 267 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Sto9g2580 267 MobiDBLite consensus disorder prediction 181 237 - -
Sto9g2580 267 MobiDBLite consensus disorder prediction 181 205 - -
Sto9g2580 267 CDD AP2 105 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2580 Sto-Chr9 28316538 28317515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2580 43 211 AP2-EREBP Transcription Factor Family AT2G40340 56.647 9.61e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g2580 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2580 - K09286 gmx:100800134 252.292