Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2577 ATGACGCAGAGGAAGAGACGTTTAGATCAATTGAAGCATCCAATTGATTCTTATCCATTTGAGACAATTTACAATGGTTCATGGCACGCTCTGGAGTTTATAACAATTAAAGGAGGAATGCTGGccttaaattttaaagataataaCTATGTGGTTATGGAGAAAGGCCCTTTCCCAGACATTAGGATAAGGTCAAAGAAAGCTACTACATCAGATTGCTCCAGATTTTTAAGACCTGGAATTGACATTTGTGTGCTTTCAACCTCTCCAAATAATAATAGCTCAGATGAAAAACGTCTCAATCCTGTGTGGGCTGATGCTAAAATCAGTTCTATACAGAGAAAGCCACACGAATCTGAGTGCTCGTGTCAGTTTTATGTCAACATCTATGTTAATCAATGTTGTCAGAATACAGAAGTAAGAACTCTTAGTAAGGAGATTAAAGTATTTGGGCTAGATCAAATTTCCATTCTCCAGAAGCTTGAGAATAGTCCTTGTGAAGATCAGCACTATCGGTGGGGTTCATCTGATGACTGTCATTCTGTGCCACAAACTAAACTACTTACAGGGAAATTTTTATCTGATATTTCATGGTTAGTTGTCACATCAGCTATAAAACAGGTTTCATTCTGTGTGAGATCTGTAGGCAACAAGATTGTGTATCAAATTTTGGAAGGTTATAGTTCACCATTGAACTGTGTTTCCCATTTAAACGTATTAAATTTCAGAGTAGACAATAATGGCATGTTGGTATCCACTGTTTCCCAAGTTGTTTCGCCCGACACCAATAAGGTTGACCAAGCACGTAACTCGCAGGAAGATGAAGCATCTCCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGTCGGAATGTACAACCCGAGCGTTACCTTGGTTGTGATGAGACTTTTGGATTGGATGTTGGTTTTGTTCGAACCAGGCCATACAAGTTCGAAACTcgaaaagatgatgatgaagataaaGAATTGTCACTGCCATTATCAATCTTGTTAGGTTTGCAAGAGAATACTCCAGTACAGGATGGTGGAAGTGGACAAAAATTCAATACCACAAAGTCCTACCATAATACTATAGTGTACAAAAGGAGAGGAAAACCCAAGGAGGTAAAGTCAGGTGATACTGGTCCAAGTGAACATCAATCTCAACTTGCCATTGTTCCTGTTCCAGATGAAAGTGATCCAATAGCTGTTAAGAAGCACAGTCCTAATGCCAAGGTTACAAAACCTTCTGCAATTGCGCAGGGAAAAGTGGAAATTCCTATCAAATATTATCACCTGATGGGTAGCACTGAACCAAAGAGGAGCAATATGGATCTGTTAGCTTTTGACCCCTATAATAATACTTCAAAGATTCCAGGTCTTGAAAATTATGCAGAAGAGACTGATGATATTTCTTCTGGACGTCATTATAGTTATGTCAACCCTAAATTACAGAGGAAGAATTCAATCGGTTTGGATGATATGGATTTTCAAAGCAGATGGGAAGGGATAAATTCCAATAAAGGAGAGCATGGGAAAAAATATCATTCAACACTTTCAAGAAGTAGACAAGCCGGTGAAGAAAAAACTTACAAAGACAGATCCTTAAGTGCAGGTGCCTACAAGGAATTGATAGATTCAtacttaaagaaaatagataCAACACCATCCGAAGCAGAACCACTTATTACTGACCAGTGGATGCAGTTCAAGGAAACAAGCAACTATGGACAGAAGACGGGAATAGAAGTATCCCCAACAGAGAATGAGGAAGAAACTGATGAACTTGATTTTTTGTGGAGAGAAATGGAAGTTTCATTGGCATCAACTTATCTGGATGAAGACGCAGAGGGTTCAAATGCTGCAGTTTTTACTGAGACCTGGGAAAAATCCAATAAACTTTGTCGACACGAGTTTAGATTGAATGAAGAAATTGGAATTTACTGCCTTAAATGTGGCTTTATCAGCATCGAAATGAAAGATGTTTCACCACCCTTTATGGAACGTTCAATATGGCACCAAGAGGAGAAGCAAAGCTGTGCAGAAGGTTCGGAATCAGAGCCAAAGGCTGATGAAGATGAGGGTTTCCATCTTGTATTACCTCCTGCTTTGCCTGATGAACCTATAACTGAAGAAAATGATAATGTGTGGGCATTAATTCCTGAGCTTAGGGAGAAGTTGCACATCCACCAAAAGAAAGCTTTTGAATTTCTTTGGAGAAACATAGCAGGGTCCACGGACCCGGCAATGATGGAAGCAGCAACCCAAAAAAGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTCCTTATTATTGCATTTCTGGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGGCCACTGGTTCTTGCTCCCAAGACAACACTCTATACTTGGTATAAAGAATTTATTAAATGGAAAATTCCTATACCGGTGTATCTGATTCATGGTCGTCGAACTTATAGAGTATTCAAGCAGAATACAGTGGTTTTTCATGGAGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAAATACAAAAGTGGCATTCCCACCCAAGTGTTCTAGTCATGGGTTACACTTCATTTTTAACATTGATGCGAGAGGACGCAAAGTTTTCTCACAGAAAATATATGGCTAAAGTACTAAGGGAAAGTCCTGGTATTCTGGTACTGGATGAAGGGCACAATCCTAGAAGCACTAAATCGAGGTTGAGGAAATGTTTGATGAAAGTACAAACAGAATTGAGAATATTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAGTACTTTAATACTCTCTGCTTGGCAAGACCCAAGTTTGCTGATGAAGTGATGAAAAAATTAGACCCTAAATACAggagaaaaaagaaaggaacAGAAAAGGCACGTCATTTAATAGAGTCACGAGCTAGAAAATTCTTCTTGGATAATATTGCCAGAAAAATTGACTCGAAAGATGACAAGGAGAGAAAGCAGGGTCTAAAAATGCTGAAAAAGATAACTAATGGTTTTATAGATGTTTACGAAGGCGGGGGTTCTGACACTCTTCCTGGTTTACAGATATATACATTGTTAATGAATACGACTGATATTCAGCATGAGATTTTGGAGAAACTCCAAAAGAAAATGACTGGGTGCAATGGATATCCATTGGAGTTGGAGCTCTTGATAACCCTTGGATCAATCCATCCTTGGTTAGTCAAAACAGCTGTATGTGCTGATAAGTTTTTCTCTATGGAGCAATTGATGGAGCTAGACAAATTCAAGTTTGATTTGAAAAAAGGGTCAAAAGTGAGATTTGTTTTGAGCCTGGTCTATCGCGtggtgaggaaggagaagattcTTATTTTTTGCCACAACATTGCACCTGTGAAGTTATTTGTGGAGTTATTTGAGTTGTTCTTCGGATGGCAAAGAGGTCGCGAAGTTTTGGTGCTTACTGGGGAGCTAGAATTGTTCGAACGAGGAAGGGTCATGGATAAGTTTGAGGAACCTGGTGGAGCATCAAAGATACTACTTGCTTCGATTTCATCGTGTGCTGAAGGCATTAGTTTGACAGCAGCATCTCGGGTGATTCTGTTGGACTCAGAATGGAATCCATCAAAAACAAAGCAGGCTGTTGCACGGGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAACTTCTGGTGACAGGAACATTGGAGGAAGACAAGTATAGAAGAACCACATGGAAAGAGTGGGTTTCCAGTATGATTTTTAGTGAAGATTTTGTGCAGGACCCTTCCAAATGGCAGATAGAAAAGATCGAAGATGATATACTCCGGGAAATGGTGGCGGAAGATCGATCTAACTCATTCAGTATGATTATGAAGAATGAAAAGGCATCCACAAACTGA 3924 0.3869 MTQRKRRLDQLKHPIDSYPFETIYNGSWHALEFITIKGGMLALNFKDNNYVVMEKGPFPDIRIRSKKATTSDCSRFLRPGIDICVLSTSPNNNSSDEKRLNPVWADAKISSIQRKPHESECSCQFYVNIYVNQCCQNTEVRTLSKEIKVFGLDQISILQKLENSPCEDQHYRWGSSDDCHSVPQTKLLTGKFLSDISWLVVTSAIKQVSFCVRSVGNKIVYQILEGYSSPLNCVSHLNVLNFRVDNNGMLVSTVSQVVSPDTNKVDQARNSQEDEASPSYNPEGLRRSKRRNVQPERYLGCDETFGLDVGFVRTRPYKFETRKDDDEDKELSLPLSILLGLQENTPVQDGGSGQKFNTTKSYHNTIVYKRRGKPKEVKSGDTGPSEHQSQLAIVPVPDESDPIAVKKHSPNAKVTKPSAIAQGKVEIPIKYYHLMGSTEPKRSNMDLLAFDPYNNTSKIPGLENYAEETDDISSGRHYSYVNPKLQRKNSIGLDDMDFQSRWEGINSNKGEHGKKYHSTLSRSRQAGEEKTYKDRSLSAGAYKELIDSYLKKIDTTPSEAEPLITDQWMQFKETSNYGQKTGIEVSPTENEEETDELDFLWREMEVSLASTYLDEDAEGSNAAVFTETWEKSNKLCRHEFRLNEEIGIYCLKCGFISIEMKDVSPPFMERSIWHQEEKQSCAEGSESEPKADEDEGFHLVLPPALPDEPITEENDNVWALIPELREKLHIHQKKAFEFLWRNIAGSTDPAMMEAATQKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFKQNTVVFHGGPKPTDDVKHILDCLEKIQKWHSHPSVLVMGYTSFLTLMREDAKFSHRKYMAKVLRESPGILVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFADEVMKKLDPKYRRKKKGTEKARHLIESRARKFFLDNIARKIDSKDDKERKQGLKMLKKITNGFIDVYEGGGSDTLPGLQIYTLLMNTTDIQHEILEKLQKKMTGCNGYPLELELLITLGSIHPWLVKTAVCADKFFSMEQLMELDKFKFDLKKGSKVRFVLSLVYRVVRKEKILIFCHNIAPVKLFVELFELFFGWQRGREVLVLTGELELFERGRVMDKFEEPGGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLVTGTLEEDKYRRTTWKEWVSSMIFSEDFVQDPSKWQIEKIEDDILREMVAEDRSNSFSMIMKNEKASTN 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2577 1307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1114 1279 IPR001650 -
Sto9g2577 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1306 IPR044567 GO:0080188
Sto9g2577 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1280 IPR027417 -
Sto9g2577 1307 MobiDBLite consensus disorder prediction 261 292 - -
Sto9g2577 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 955 IPR027417 -
Sto9g2577 1307 MobiDBLite consensus disorder prediction 506 532 - -
Sto9g2577 1307 Pfam Helicase conserved C-terminal domain 1110 1226 IPR001650 -
Sto9g2577 1307 MobiDBLite consensus disorder prediction 370 389 - -
Sto9g2577 1307 SMART ultradead3 724 967 IPR014001 -
Sto9g2577 1307 CDD SF2_C_SNF 1109 1238 - -
Sto9g2577 1307 MobiDBLite consensus disorder prediction 507 532 - -
Sto9g2577 1307 Gene3D - 707 994 IPR038718 -
Sto9g2577 1307 SMART helicmild6 1138 1227 IPR001650 -
Sto9g2577 1307 MobiDBLite consensus disorder prediction 261 278 - -
Sto9g2577 1307 CDD DEXHc_ATRX-like 728 953 - -
Sto9g2577 1307 Gene3D - 1030 1307 IPR027417 -
Sto9g2577 1307 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1306 - -
Sto9g2577 1307 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 753 952 IPR014001 -
Sto9g2577 1307 Pfam SNF2-related domain 728 979 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2577 Sto-Chr9 28305985 28311182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2577 1101 1245 RAD5 or RAD16-like Gene Family AT5G43530 33.553 1.08e-12 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto9g2577 SNF2_N 1.1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2577 K10875 - gmx:100811703 1741.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2577 9 28305985 28311182 Sto9g2577 9 28305985 28311182 ECH