Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2568 ATGCTTAACAAATTGGGCGGTGCATTTGCTCCAAAGCCTTCATCTGGTCCCCACAAATCCAGGGAATGCCTTCCACTCGTGCTTATCTTGCGAGAACGGTTGAAATATGCTCTGACATACCGCGAAGTCATTTCTATTCTGATGCAGCGACATGTGCTGGTTGATGGGAAAGTCAGGACAGACAAAACATATCCATCTGGTTTCATGGATGTTGTGTCAATTCCAAAATCAAATGAGAACTTCCGTCTCCTTTATGACACAAAAGGTCGATTCCGTCTCCACTCAATCAGGGATGAGGAAGCAAAGTTTAAGCTCTGCAAGGTACGGTCAGTGCAGTTCGGGCAAAAAGGTATTCCCTATTTGAATACCTATGATGGCCGTACTGTTCGCTATCCCGACCCACTCATAAAAGCCAATGACACCATCAAGCTCGATCTAGAGAGCATGAAAATTGTTGACTTCATCAAATTCGATGTTGGGAATGTAGTTTTCGTAACAGGTGGAAGAAACAGGGGGCGCGTGGGAGTGATCAAGAACAGGGAGAAGCACAAGGGAACCTTTGAGACAGTCCACATTCAGGATGCCACAGGGCATGAATTTGCTACCAGGTTGGGCAATGTGTTCACGATTGGCAAGGGTACAAAACCTTGGGTATCCCTTCCTAAGGGCAAGGGTATTAAACTATCAATCATTGAGGAGTCTAGGAAGAGGATCGCTGCCCAACAAGCAGTCACTGCATAA 741 0.4602 MLNKLGGAFAPKPSSGPHKSRECLPLVLILRERLKYALTYREVISILMQRHVLVDGKVRTDKTYPSGFMDVVSIPKSNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTVRYPDPLIKANDTIKLDLESMKIVDFIKFDVGNVVFVTGGRNRGRVGVIKNREKHKGTFETVHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEESRKRIAAQQAVTA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2568 246 ProSiteProfiles S4 RNA-binding domain profile. 24 86 - -
Sto9g2568 246 MobiDBLite consensus disorder prediction 1 20 - -
Sto9g2568 246 PIRSF RPS4a_RPS4e 1 223 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto9g2568 246 Gene3D - 157 227 IPR014722 -
Sto9g2568 246 CDD S4 33 94 - -
Sto9g2568 246 Pfam RS4NT (NUC023) domain 1 21 IPR013843 -
Sto9g2568 246 Pfam KOW motif 159 192 IPR005824 -
Sto9g2568 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 1 202 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto9g2568 246 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 203 246 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto9g2568 246 SMART kow_9 156 183 IPR005824 -
Sto9g2568 246 CDD KOW_RPS4 157 211 IPR041982 -
Sto9g2568 246 Pfam S4 domain 26 72 IPR002942 GO:0003723
Sto9g2568 246 Pfam 40S ribosomal protein S4 C-terminus 194 240 IPR032277 -
Sto9g2568 246 Gene3D - 104 154 IPR038237 -
Sto9g2568 246 Hamap 30S ribosomal protein S4e [rps4e]. 3 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Sto9g2568 246 Gene3D - 1 99 IPR036986 GO:0003723
Sto9g2568 246 PANTHER 40S RIBOSOMAL PROTEIN S4 1 202 - -
Sto9g2568 246 PANTHER 40S RIBOSOMAL PROTEIN S4 203 246 - -
Sto9g2568 246 Pfam Ribosomal family S4e 78 151 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2568 Sto-Chr9 28249306 28250839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2568 1 244 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.164 2.83e-170 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2568 K02987 - mnt:21390349 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g0470 6 5105204 5111400 Sto9g2568 9 28249306 28250839 ECH
Sto9g2568 9 28249306 28250839 Sto9g2568 9 28249306 28250839 ECH