Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2560 ATGGACGAATCATCTCTATCTACGATGATGATCTTCTCAGGCTTTTTACCAACTGGGTCCCTGCTAGATTCATTGATCCACATATCCAACGAAGTTGCCTCCTTGGACAAGTTCCCTTTTGTTCAATTCAGGAATATCTCATCCATGATCAGGAGGGTCAAGCTTCTTTCTTCTCTGTTCGAGGAGATTCAGGAAACAGATACCCCACTTCCTCCTTCTTCCATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGAAGAGTGAAGCTTTTGATCCAAGAATGCAAGGAAAGCAGCTCTCTTTGGTGTCTCATACAGTTAGAGTTCATTTCCAACCAATTCTGTGTGCTTGTAAAGGAGATGGGAAGGGCTTTGGATATTCTTCCTTTGAGTTTGCTTAATATAACGGCAGATATAAGAGAGCAAGTGGAGCTTCTGCACAAGCAAACAAAAGGGGTTGACTTGTTCATTGATCCTCGAGAGATTCAACGAAGAGATCAGCTTCTGCAAGTAATGGCCAACAACAATTTACAGAACAAGAAGAATAAGGGATTCCTCGAGTTTGGGAAAGTGCATGAAATATTAAGCAGCGTTGGTTTGAGAACACCATCAGATTATGATAGAGAAATATCAAAGCTTGAGGCTGAAGCTAAGAATCAGGCAGGCACAGGAGGATTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGGTTACCTACGCCAAGTCCATGATATTTAGAGATGGAGAAAATGACATAGTTGAAGAAGATTGTAAGCCAGTGTCTGcaattacatataaaaactctgatacttcttcttcatcatcatcttcatcttcgtcTACTCAGTCGACAGCACATAATGTTCCTGATGAATTTCGTTGCCCAATTTCACTGGATTTAATGAGAGACCCAGTGATTGTATCATCTGGCCATACTTATGATCGAACTTCAATTGCACAATGGATAAATTCTGGGCACCACACATGCCCCAAAAGTGGGCAAAGGTTAATCCACACTGCTCTAATACCCAACTACGCATTGAAGAGTCTTGTCCAGCAATGGTGCTATGAGAAAAACGTCCCAGTGAATGAGCTGACCTCATCATCGTCTTCTTCGACCTGGGATGAATCCAACAGCAAGGACAACTCGAACGAGAAAGCCATAGATCATCTATCTGCAAAAAAAGCAGCCATAGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTAGCAACTGGTTCAGCAGAAATCCAAAGGCAGGCGGCTTACGAGCTTCGATTACTAGCAAAAACAGGGATGGACAATCGAAGAATCATCGCCGAGGCAGGGGCCATTCCATTTCTAGTAACATTACTTGGTTCCCATAATCCAAGGATCCAGGAACACGCCGTCACGGCATTGTTCAACCTCTCCATCTTTGACAACAACAAGGTATTGATCATGGCCGCAGGAGCAGTGGACAACATAGTAGAAGTGCTTGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATATTTAGCTTGACTATGGTTGATGATTGCAAGGTAGAAATAGGAGGTCGAGCTAGGGCCATACCTGCATTAGTAGGACTCTTGAGAGAAGGCACTCCTATAGGGAAAAGAGATGCTGCAACAGCTATTTTTAATCTTGCAGTTTACAATCCTAACAAGGCGAGAATTGTTAATGCTGGGGCTGTACCTTTGCTTATTGAATTGCTTATGGATGATAAAGCTGGGATTACAGATGATTCTTTGGCTGTGCTTGCTTTGCTTCTGGGTTGCTCTGAAGGGTTGGAAGAGATAAAGAATAGTAGAGTGTTGGTGCCTCTTCTGATTGATCTTTTGAGGTTTGGGTCACCCAAAGGGAAGGAGAACTCTATAACGCTTTTGCTGGGATTGTGCAAAGAAGAAGGTGAAGTGGTAGCAAGGAGGCTATTGGCAAATCCACGAAGCATTCCTTCTCTTCAGAGTTTGGTTGCTGATGGTTCTTTGAGGGCTCGAAGGAAGGCTGATGCCTTGCTTAGACTTCTCAATAGGTGCTGCTCTCAATCTCATCATTCTCTCTGA 2091 0.4204 MDESSLSTMMIFSGFLPTGSLLDSLIHISNEVASLDKFPFVQFRNISSMIRRVKLLSSLFEEIQETDTPLPPSSILCFTELFSVIRRVKLLIQECKESSSLWCLIQLEFISNQFCVLVKEMGRALDILPLSLLNITADIREQVELLHKQTKGVDLFIDPREIQRRDQLLQVMANNNLQNKKNKGFLEFGKVHEILSSVGLRTPSDYDREISKLEAEAKNQAGTGGLIVVSNINNLISLVTYAKSMIFRDGENDIVEEDCKPVSAITYKNSDTSSSSSSSSSSTQSTAHNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYEKNVPVNELTSSSSSSTWDESNSKDNSNEKAIDHLSAKKAAIDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHNPRIQEHAVTALFNLSIFDNNKVLIMAAGAVDNIVEVLESGKTMEARENAAAAIFSLTMVDDCKVEIGGRARAIPALVGLLREGTPIGKRDAATAIFNLAVYNPNKARIVNAGAVPLLIELLMDDKAGITDDSLAVLALLLGCSEGLEEIKNSRVLVPLLIDLLRFGSPKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLVADGSLRARRKADALLRLLNRCCSQSHHSL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2560 696 MobiDBLite consensus disorder prediction 266 290 - -
Sto9g2560 696 SMART arm_5 561 601 IPR000225 GO:0005515
Sto9g2560 696 SMART arm_5 436 476 IPR000225 GO:0005515
Sto9g2560 696 SMART arm_5 520 560 IPR000225 GO:0005515
Sto9g2560 696 SMART arm_5 391 434 IPR000225 GO:0005515
Sto9g2560 696 SMART arm_5 602 643 IPR000225 GO:0005515
Sto9g2560 696 CDD RING-Ubox_PUB 294 336 IPR045210 -
Sto9g2560 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 368 IPR013083 -
Sto9g2560 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 447 489 IPR000225 GO:0005515
Sto9g2560 696 PANTHER U BOX DOMAIN-CONTAINING 18 694 - -
Sto9g2560 696 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Sto9g2560 696 MobiDBLite consensus disorder prediction 366 380 - -
Sto9g2560 696 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 18 694 - -
Sto9g2560 696 SUPERFAMILY ARM repeat 408 685 IPR016024 -
Sto9g2560 696 Gene3D - 369 528 IPR011989 -
Sto9g2560 696 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Sto9g2560 696 Pfam Armadillo/beta-catenin-like repeat 438 475 IPR000225 GO:0005515
Sto9g2560 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Sto9g2560 696 Gene3D - 529 688 IPR011989 -
Sto9g2560 696 SUPERFAMILY RING/U-box 277 364 - -
Sto9g2560 696 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Sto9g2560 696 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2560 Sto-Chr9 28202640 28204730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2560 19 695 U-box Gene Family AT3G46510 36.896 6.42e-124 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2560 - - gmx:100793498 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2560 9 28202640 28204730 Sto9g2560 9 28202640 28204730 ECH