Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2556 ATGGAGCTTCTGGACACTCCAGGAAGGAATCGATGTCGATGGTGCGTATATACTGCAAGGGCagGCAAGGGTGGTCCTGACAACAACAAATTTAGGTACCGAGGTGTGAGGCAACGAAGCTGGGGTAAGTGGGTCGCCGAGATCCGAGAGCCCCGCAAGCGAACCCGAAAGTGGCTTGGCACCTTCGCTACAGCCGAGGACGCCGCTCGAGCTTACGACCGCGCCGCCATCATCCTTTACGGCTCCAGGGCTCAGCTCAATCTACAGCCATCCGCTACTTCGTCTTCTAACTCTAACTCCTCTCGTGGCTCCAACTCTTGCTCCTCTTCCACTCAAACCCTTCGTCCCTTGCTTCCTCGCCCCTCCGCCTTCGCCTCCACATCGGGGTTGTTACCTTATGGGGTATACCCTAATATTCATAATCATTATATCCCGCATCAGGCACAGAGTATATCTGCACCGGAGGAGGAAATCGGCGTCGGAACGTGGTCGATGCCCAATGACGAAGAATACGTCCCAGCAAGTTTATGGGATTATAACGATCCTTTCttctttgatttttaa 564 0.5266 MELLDTPGRNRCRWCVYTARAGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSATSSSNSNSSRGSNSCSSSTQTLRPLLPRPSAFASTSGLLPYGVYPNIHNHYIPHQAQSISAPEEEIGVGTWSMPNDEEYVPASLWDYNDPFFFDF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2556 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 20 130 - -
Sto9g2556 187 CDD AP2 32 89 IPR001471 GO:0003700|GO:0006355
Sto9g2556 187 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Sto9g2556 187 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Sto9g2556 187 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Sto9g2556 187 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Sto9g2556 187 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Sto9g2556 187 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Sto9g2556 187 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 20 130 - -
Sto9g2556 187 MobiDBLite consensus disorder prediction 89 115 - -
Sto9g2556 187 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2556 Sto-Chr9 28175615 28182188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2556 20 135 AP2-EREBP Transcription Factor Family AT2G40220 71.545 1.30e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g2556 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2556 K09286 - zju:107413884 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2556 9 28175615 28182188 Sto9g2556 9 28175615 28182188 ECH