Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2546 ATGTTAAAGGCGTGGATCATAATATTTGGTGAGAAAAATCCCGTACAAGAAATATTAGATATTAGTAACAACCCTAGTTCTGAAAGTAAACTTTCTTCCTCAAACAACATGGATAGTGTGTTTCAGAAGCAGAGCCATGATTATCTGTGTGGTTCTTCAGCTTTGCTTGAGCTGTCTGCGTCCGATGATCTTGAAGCTTTCAGAAGCCATGTTGAAGAGAAGGGTTTTGACATCAATGAAGTGAGCTCTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGGTTGGAGAGGAGGACGCCTCTCATGATTGCTTCTTTATATGGAAGCATCCGAGTGCTGAAGTATATTCTTGAGACAGGTAGGGTTGATGTGAACAGGACCTGTGGTTCTGATAGGGCCACTGCTCTTCATTGTGCTGTTGTGGGTGGCTCTGAATCTTCACCCGAGACAGTTAAGCTCTTACTTGATGCTCGGGCTGATGTTGATTGCGTTGATGCTAGTGGAAATAAGCCTCTTAACCTGATGGCCCCTGCCTTTAATTCCATGTACAACACACGAAGGAAGGCCATCGAGTTGTTGCTTAGAGGCGTGGAAGGAGATCAAATCATCAGCCAGGAGATGGAGCAACAGAAAATTGCTGTGCCTTCTTTCTCTTCGAAAGAAGGAACTGAGAAGAAAGAATATCCTGTTGATATATCATTGCCTGACATAAACAATGGTATATATGGAACAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCCCATGATTGGACCGAGTGCCCATTTGTTCATCCCGGGGAAAATGCAAGGAGGAGAGATCCACGGAAGTACCCTTACAGCTGTGTGCCCTGCCCAGAATTTCGCAAGGGGTCCTGCCAAAAGGGGGATACCTGTGAGTATGCACATGGTGTTTTCGAGTCCTGGCTCCATCCTGCACAATACCGAACAAAGCTGTGCAAGGATGAGACTGGATGCACTCGCAAAGTCTGTTTCTTTGCTCATAAACCTGAAGACCTACGCCCCGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCTAAGTCATTTTTGTCTGGTGCACTTGATATGACATCAATGAGTCCATTGACTCTTAGTTCTTCGTCTTTGCCGATGCCAACTGTTTCAACACCACCCATGTCTCCCTTGACAGCTTCAtctcccaagagtggaagcttgtggCAGAACAAATTAACCCTAACCCCACCATCCTTGCAGCTCCCAGGGAGCCGGCTTAAGGCTGCTTTGAGTGCTAGGGATCTGGACCTGGAAATGGAACTGCTTCGTCTGGAAACTCCTGCTAATCAACAGCAGCAGCAGCGACAGCAATTGATAGAAGAATTGGCTCGAATCACTTCCCCATGTCTACCAAATAAAGACTTCAATAGGATTGGTGATTTGAACCCAACCAATCTTGATGAGCTTCTAGGATCTGTTGATCATTCTGTATTATCTCAATTACGTGGACATCAGGTGCAACCCTCATCACCCAGCCAATTACACTCTCCCAGTGGGCTTCAGATGCGCCAAAATATCAACAACGTTCGTGCAAGCTATCCGAACAACCTTCCTTCCTCTCCAGTGAGAAAACcatcaggttttgggtttgactCATCAGCTGCTGTGGCTGCAGCAGTCATGAATTCCAGGTCTGCCGCCTTTGCAAAGCGAAGCCAAAGTTTTATCGACCGAGGTGCTTCAATGACCCACCATCTTGGACTATCTTCACCTTCTAACCCCACCTGTAGGGTGTCCTCTGCCCTCTCGGATTGGAGTTCTCCCAACGGGAAATTAGATTGGGGCATGAATGGAGATGAGCTGCACAAGCTGAAGAAATCTGCTTCATTTGGGTTCCGAAACAACACAGCGGCTGCTGGCTCCATGACACCGTCAGAACACGTTGAACCGGATGTCTCATGGGTTCATTCGTTGGTTAAGGACGTGCCGCCCAATGAGAGTTACGGCTCTGATAAGAAGCAGTATGATCTGAGTAAGGAGATGCTTCCACCATGGGTGGAACAAATGTATATAGAACAGGAGCAGATGGTGGCATAA 2100 0.4576 MLKAWIIIFGEKNPVQEILDISNNPSSESKLSSSNNMDSVFQKQSHDYLCGSSALLELSASDDLEAFRSHVEEKGFDINEVSSWYGRRIGSKKMGLERRTPLMIASLYGSIRVLKYILETGRVDVNRTCGSDRATALHCAVVGGSESSPETVKLLLDARADVDCVDASGNKPLNLMAPAFNSMYNTRRKAIELLLRGVEGDQIISQEMEQQKIAVPSFSSKEGTEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDTCEYAHGVFESWLHPAQYRTKLCKDETGCTRKVCFFAHKPEDLRPVYASTGSAMPSPKSFLSGALDMTSMSPLTLSSSSLPMPTVSTPPMSPLTASSPKSGSLWQNKLTLTPPSLQLPGSRLKAALSARDLDLEMELLRLETPANQQQQQRQQLIEELARITSPCLPNKDFNRIGDLNPTNLDELLGSVDHSVLSQLRGHQVQPSSPSQLHSPSGLQMRQNINNVRASYPNNLPSSPVRKPSGFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGASMTHHLGLSSPSNPTCRVSSALSDWSSPNGKLDWGMNGDELHKLKKSASFGFRNNTAAAGSMTPSEHVEPDVSWVHSLVKDVPPNESYGSDKKQYDLSKEMLPPWVEQMYIEQEQMVA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2546 699 SMART c3hfinal6 322 345 IPR000571 GO:0046872
Sto9g2546 699 SMART c3hfinal6 287 313 IPR000571 GO:0046872
Sto9g2546 699 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 40 698 - -
Sto9g2546 699 ProSiteProfiles Ankyrin repeat region circular profile. 132 166 - -
Sto9g2546 699 ProSiteProfiles Ankyrin repeat profile. 132 167 IPR002110 GO:0005515
Sto9g2546 699 SMART ANK_2a 97 127 IPR002110 GO:0005515
Sto9g2546 699 SMART ANK_2a 132 164 IPR002110 GO:0005515
Sto9g2546 699 Pfam Ankyrin repeats (3 copies) 76 164 IPR002110 GO:0005515
Sto9g2546 699 Gene3D - 22 200 IPR036770 -
Sto9g2546 699 SUPERFAMILY Ankyrin repeat 42 174 IPR036770 -
Sto9g2546 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 292 312 IPR000571 GO:0046872
Sto9g2546 699 MobiDBLite consensus disorder prediction 380 404 - -
Sto9g2546 699 ProSiteProfiles Zinc finger C3H1-type profile. 287 314 IPR000571 GO:0046872
Sto9g2546 699 Gene3D - 288 350 - -
Sto9g2546 699 PANTHER UNKEMPT FAMILY MEMBER 40 698 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2546 Sto-Chr9 28068583 28070803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2546 53 694 C2H2 Transcription Factor Family AT5G12850 39.007 9.48e-135 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto9g2546 Ank_2 6.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2546 - - gmx:100783376 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2546 9 28068583 28070803 Sto5g1499 5 10356245 10365513 ECH
Sto9g2546 9 28068583 28070803 Sto9g2546 9 28068583 28070803 ECH