Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2541 ATGACGACATTACCATCTTACTTCCTCATCCTTACTCTCTCTGTCGCCTCTATAAAATTTTTCGCATTAACTCACTCATCTTATGCTCTCGGCTCCGGCGCTACCCTCGCCGTCGTCAGCGACGGCTCCGCCACTGTCTGCGGCATCGTAGCAGGGGAGCCTACGCAGCGCATTGAATGCTACCATGGCGGGAACATCATCACCGTCCCTCCCAATGTCTCCTTTGCGTCGATTTCCGGTGGGAGCAGATACTTCTGCGGCCTCAGGTCCGGCAACTACAGTTTGCTTTGCTGGAACAGTACCTTCCAACCGAAGAGGCTTTATAACAATTACTCTGTTCTGCTTGAGAATCTCTCAATTGGGGATACTCACATTTGCTCCACGCTAGTTGGTAATGGGAAGGTGGAATGCTGGAGAAAAAACAGGGGATTTCAATTACCACCATTTGGGTATTCTCAATTTGCGTCCATATCTTCAGGGTTTGGCTTTTCTTGTGGGATTTTGAGGAATAATTCTCGGGTTCGGTGTTGGGGGAACATGCCCATTGCGAGTGAGATAGAGAGTGAGTTTGTGAATATTTCAATGTCGAGTCTTGTGGCGGGTGATTCTCATGTTTGTGGATTGGATTCTAATGGGTTTTTGGTGTGTAAAGGAAGTAATAGCTCAGGTCAACTCGAGGTTCCTGAGAGTGATGAGCCATTGGAGTATAGTGGGTTAGCACTCGGAGCGGAGCATAGCTGTGCCATTAGAAGCTCGAATGGTTCGGTGGTGTGCTGGGGTGGGAGGGGACAATTCTCAGTGAATGTGACCGAAGGAGTTTCTTTTGAGGTAATCGTTTCTGGGTCCAATTTTAGTTGTGGGGTgacaagaagtaatttttctGTAATGTGTTGGGGGCCTGGTTGGCCTACTACTTCTGGGCCTCACCTTCCTTTGCGTCCTATTCTTCCTGGGCCTTGTGTCCAATCTTCTTGTATTGAATGTGGGATTTACCCTCAATCTCAAAATCTATGCTCTGGTTTTGGTAAAATTTGTAAGCCCTGTTTGCCTCATATATCGCCGTCGCTACGGCTGCTACCACCGTCACTCCCACCACTACCACTACCACCGCCACCTCTTTCTCCTCTGTCATCTCCATCAAAGACATTGACAAGGGCTTTACTCATATTCGCCATGGTAGGATTAGTAGGAATTATAGCTGGCATTTGCACAATAATGTACTGCCTTTGGAGTTGTGGTGAAAAGAAAATTCACAATTCTGTTCAACCCACAATCACAAGATCAGGAAGCTCCAGTCGTGGTGGTGGCAGTTTTTCTTCCTATTCAAACAATAGCATTAGCCAGGTACCTTCAAGATCATCATCATCCATCACTAGGCGTCAAGGTTCATTCCTATTGATGAGACGCCAGAGAAGTGGTACCTCTTCCTCATACGCTACCACAACAAAACACACAGAAGCAGAGGAGTTCACTCTCGCCGAGCTCGCATCCGCCACCAACAATTTCTCGCCGCAGAACGTCATCGGCGCCGGGAGCTACGGCGTCGTGTACCGAGGCAAACTCCCCGACGGCCGTGACGTGGCAGTCAAAAGAGGcgaaaacaagaagaggaagtTCCAAGAAGAGGCGAAAACCGCATTCGAGTCAGAAATAGCGTTCTTGTCACGCCTTCACCACAAGCACCTGGTTAGCCTCGTCGGGTTCTGCGAAGATGAGGAGGAGAGGCTATTGGTGTATGAATACATGAAGAACGGAGCATTGCACGACCATTTACACAATAGAAACAGTAGTTTTCTGAATTCCTGGAGAATGAGGATCAAAATCGCACTAGACGCTTCTAGAGGAATCGAATATCTCCATAACTACGCAGTTCCGCCTATAATCCACAGAGACATTAAATCTTCCAACATTCTCCTGGACGCGAATTGGACGGGGAGAGTGTCCGATTTTGGGTTATCGCTAATGGGGGCCCCGGAAACAGAGCAGGAACAGAGTGCGATGAAAGCCGCAGGAACCATGGGATACATCGATCCAGAGTATTATAGCCTGAATGTATTGACGACGAAGAGTGATGTGTACGGATTTGGAGTGGTTCTGCTGGAGCTTTTGACGGGAAGGAGAGCGGTATTCAAGAACGGTGAAGAGGGAGGAAGAACGGTGAGCTTGACGGAGTACGCGGTGCCGGCGATAATGGCGGGGGAAATGGAGAGGGTGTTGGATCGGAGAGTGGGGGCGCCGGCGGCGGTGAATGAAGCGGAGGCGGTGGAGTTGGTGGGTTACACGGCGATGCTTTGTGTGAATTTGGAAGGGAAAGATAGGCCGACAATGAGTGATGTAGTGGGCAATTTGGATAGGGCTTTGGCTCTTTGTGATAGTGCTGCACGTGCTCGTGCACGTGCTCCTGCTCAAGCTCAAGCTCAAGCTCAAGCACGTGCTTATGTTCCTGCTCATGGTAATGATAaagatgatggtgatggtgatacTTCTAGTAGTTTCATCTCTGATTCAGACTGA 2514 0.4805 MTTLPSYFLILTLSVASIKFFALTHSSYALGSGATLAVVSDGSATVCGIVAGEPTQRIECYHGGNIITVPPNVSFASISGGSRYFCGLRSGNYSLLCWNSTFQPKRLYNNYSVLLENLSIGDTHICSTLVGNGKVECWRKNRGFQLPPFGYSQFASISSGFGFSCGILRNNSRVRCWGNMPIASEIESEFVNISMSSLVAGDSHVCGLDSNGFLVCKGSNSSGQLEVPESDEPLEYSGLALGAEHSCAIRSSNGSVVCWGGRGQFSVNVTEGVSFEVIVSGSNFSCGVTRSNFSVMCWGPGWPTTSGPHLPLRPILPGPCVQSSCIECGIYPQSQNLCSGFGKICKPCLPHISPSLRLLPPSLPPLPLPPPPLSPLSSPSKTLTRALLIFAMVGLVGIIAGICTIMYCLWSCGEKKIHNSVQPTITRSGSSSRGGGSFSSYSNNSISQVPSRSSSSITRRQGSFLLMRRQRSGTSSSYATTTKHTEAEEFTLAELASATNNFSPQNVIGAGSYGVVYRGKLPDGRDVAVKRGENKKRKFQEEAKTAFESEIAFLSRLHHKHLVSLVGFCEDEEERLLVYEYMKNGALHDHLHNRNSSFLNSWRMRIKIALDASRGIEYLHNYAVPPIIHRDIKSSNILLDANWTGRVSDFGLSLMGAPETEQEQSAMKAAGTMGYIDPEYYSLNVLTTKSDVYGFGVVLLELLTGRRAVFKNGEEGGRTVSLTEYAVPAIMAGEMERVLDRRVGAPAAVNEAEAVELVGYTAMLCVNLEGKDRPTMSDVVGNLDRALALCDSAARARARAPAQAQAQAQARAYVPAHGNDKDDGDGDTSSSFISDSD 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2541 837 SUPERFAMILY RCC1/BLIP-II 192 304 IPR009091 -
Sto9g2541 837 CDD STKc_IRAK 508 785 - -
Sto9g2541 837 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Sto9g2541 837 Pfam Protein kinase domain 505 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g2541 837 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 10 795 IPR044815 GO:0004674
Sto9g2541 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Sto9g2541 837 ProSiteProfiles Protein kinase domain profile. 502 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g2541 837 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 10 795 - -
Sto9g2541 837 Gene3D - 191 331 IPR009091 -
Sto9g2541 837 Gene3D - 22 190 IPR009091 -
Sto9g2541 837 MobiDBLite consensus disorder prediction 800 837 - -
Sto9g2541 837 SUPERFAMILY RCC1/BLIP-II 23 228 IPR009091 -
Sto9g2541 837 Gene3D Phosphorylase Kinase; domain 1 463 581 - -
Sto9g2541 837 Gene3D Transferase(Phosphotransferase) domain 1 582 804 - -
Sto9g2541 837 Pfam Regulator of chromosome condensation (RCC1) repeat 197 224 - -
Sto9g2541 837 SUPERFAMILY Protein kinase-like (PK-like) 477 781 IPR011009 -
Sto9g2541 837 SMART serkin_6 502 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g2541 837 MobiDBLite consensus disorder prediction 424 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2541 Sto-Chr9 28011578 28014091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2541 11 790 Receptor kinase-like Gene Family AT3G55950 56.967 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sto9g2541 Pkinase 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2541 - - gmx:100798905 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2541 9 28011578 28014091 Sto5g1505 5 10435991 10441509 ECH
Sto9g2541 9 28011578 28014091 Sto9g2541 9 28011578 28014091 ECH