Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2540 ATGACTTCAGCAAACTACAACCACCCACCGCCTCTCTCGgactccgactccgactccgaccATGGCCAGTCCAGCTCGGAGCTCCGTCGCCACTCCGACCTCTCCGACTCCATTTTCAAATCCTACTTCGAGTTCATCGGCAAGTCATCGGCAACCGCTGCGGACCTTTCAAAGATCCAGTCCTTtctcacctcctcctcctccggcGCTCTATCTTGCTTGATATGCCTCGAACGGATCAGACCCGCCGACCCCACCTGGTCCTGCACTTCCCTCTGTTTCGCCGTCTTCCATCTTGTCTGCATTCAGAGCTGGGCGCGCCAGGCATCCGACCTCGCCGCCGTACGCGCGGCAATGCGCCTCCCTATTACAGCTGCCAAGGCTGCTGAGACTGCCTCGTGGAACTGCCCCAAATGCAGAGTTGAATACTCCAAAACACAGATCCCCAGATCTTACGTTTGTTTCTGTGGAAAATTGGAGAATCCTCCCAGTGATGATCCCTGGGTTTTGCCTCATTCATGTGGTGAGATTTGTGGTAGGCCATTGAAGCACAATTGTGGGCACCATTGCCTGTTGCTATGCCATCCTGGGCCATGTCCATCGTGCCCAAAGCTCGTCAATTCTCGATGCTTTTGTGGGACACTCCAGGACGTACGCCGATGTGGTTATAAGGAATTTTCCTGCAACAAACCTTGTTCAAAGCTCTTGGACTGTGGTGTTCACAGGTGTTCTGAGATCTGTCACATTGGTCCGTGCCCACCTTGCCGTGCCCGTGGAGTTTTTAAGTGCCAATGTGGGCAGAAAAAGGAGGAGAGGGAGTGTTGTGATCGCATTTTTCAATGCGATACACCTTGCGAGAAAGCTCTTAGTTGCGGGAAGCATGTTTGCCAGAAAGGGTGTCATTCGGGTGGCTGTGGCGAGTGCCCTTTCCAAGGGAAAAGGACGTGTCCGTGCGGGAAGAGGATTTATGAAGGAATTCCTTGTGATGCTGCAGTACAATTATGTGGAGCGACCTGCGATAAAATGTTGAGTTGCGGATATCACAGGTGCCCTGAGCGATGTCACCGTGGGCCTTGCATTGAGACTTGCAGAACTGTTAATAGGTTCCTTGCTATCAAGATTTGTCATGTGAAAGGAAGTGTCAGAGGATGCGTGACTGTGGGCGCCATGCTTGTAAACGTCGCTGCTGTGATGGTGACTGCCCACCGTGTTCAGAGATATGTGGAAGGAGGCTTCGATGTAAGAACCATAAATGTCCTTCTCCATGCCATACGGCCAAATTTATACCTGATGACATATGGGCTGCATATCATTTTAATCTGCAAATTTCGAAGTCTGAAGTATAATGCACTATATGATGATAGACAACTTTGTTCTTGCAGAGGTCCCTGTGCCCCTTGTCCAATAATGGTGACAATCTCGTGTGCATGTGGTGAGACGCATTTTGAGGTTCCTTGTGGTACTGAGATGGATCAAAAGCCACCTAAATGTCCTAAAAAATGTCGTATTACTCCTTTATGCAGGCATGCACCAAACTCCAAGCCTCACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTTCCTTGTGATGAAGAGTACCCATGTGGCCACAAATGCAAATTAAGGTGTCATGGCTCTAAACCTCCTCCTAATCCTGAGTTTACactgaaaccaaaaaaaaagaagactaTACAGCAGAGTGAATGTGTTCCTGGCACTCCATGCCCGCCTTGTCCAGAACTTGTGTGGAGATCATGTGTTGGGCAACACATGGGAGCAGATAGAATGATGGTCTGCTCTGATAAATCACAGTTTTACTGTGAAAATTTGTGTGGAAATCCTCTCCCATGCGGTAATCATTATTGTACTAAAACCTGTCATGCCTTGGGGAAACAATCTTCCTTGAACCAGCCACAGAGAAGTGAGCCTTGTGAAGATTGTCGTCTTCCATGCCAAAAGGCAAGAGAACCTACCTGTCCACATCCCTGCCCTCAGCGCTGCCATCCTGGAGAATGCCCTCCATGCAAGGTGCTCATTAAACGATCATGTCATTGTGGTACAATGGTCCATGTTTTTGAGTGCATATATTACAACACATTGTCTGCCAAAGATCAAGAGACAGTTCGTTCATGTCGTGGGCCTTGTCATAGaaagttGCCATACTGTACACATCTATGCCCAGAGACATGTCATCCTGGTGAATGCCCAAATCCTGAGAAATGCTGTAAAAAGGTCACTGTTCGTTGCAAATGCCACACTCTGAAAAAAGAATGGCTATGTCAAGATGTTCAAGCTGCCTATCATCGAGATGGTTGTCATCCCAGAGATATACCAAAAAATCACTTTGGAGTTGGTCTAATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGCAAATCTAGAGTTATAGAGGAAAAAGCGCCTGAGACTGAAAAGCCAGTTCCCAAACGCCGGAAAAGGAGGGAACGTGTTCAAGAATCCAACCAAGTGACAAAACTACAGAAAATTGTATCCATCATCAAGCAGCTTCTTCTATTAGTCTTTTTTCTAGTGGTTCTTCTTGCTACTATGTACTGGGGTTACGAGGGTCTCTTATGGCTCAATGATTGGATGAATGAACTTGACGAACAAAGACAAAGAAGATCTCCTCGACTCTCATAA 2691 0.4615 MTSANYNHPPPLSDSDSDSDHGQSSSELRRHSDLSDSIFKSYFEFIGKSSATAADLSKIQSFLTSSSSGALSCLICLERIRPADPTWSCTSLCFAVFHLVCIQSWARQASDLAAVRAAMRLPITAAKAAETASWNCPKCRVEYSKTQIPRSYVCFCGKLENPPSDDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVNSRCFCGTLQDVRRCGYKEFSCNKPCSKLLDCGVHRCSEICHIGPCPPCRARGVFKCQCGQKKEERECCDRIFQCDTPCEKALSCGKHVCQKGCHSGGCGECPFQGKRTCPCGKRIYEGIPCDAAVQLCGATCDKMLSCGYHRCPERCHRGPCIETCRTVNRFLAIKICHVKGSVRGCVTVGAMLVNVAAVMVTAHRVQRYVEGGFDVRTINVLLHAIRPNLYLMTYGLHIILICKFRSLKYNALYDDRQLCSCRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKKCRITPLCRHAPNSKPHKCHYGACPPCRLPCDEEYPCGHKCKLRCHGSKPPPNPEFTLKPKKKKTIQQSECVPGTPCPPCPELVWRSCVGQHMGADRMMVCSDKSQFYCENLCGNPLPCGNHYCTKTCHALGKQSSLNQPQRSEPCEDCRLPCQKAREPTCPHPCPQRCHPGECPPCKVLIKRSCHCGTMVHVFECIYYNTLSAKDQETVRSCRGPCHRKLPYCTHLCPETCHPGECPNPEKCCKKVTVRCKCHTLKKEWLCQDVQAAYHRDGCHPRDIPKNHFGVGLIPCNSDCKSKVQVVESELQLRKSRVIEEKAPETEKPVPKRRKRRERVQESNQVTKLQKIVSIIKQLLLLVFFLVVLLATMYWGYEGLLWLNDWMNELDEQRQRRSPRLS 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2540 896 MobiDBLite consensus disorder prediction 1 30 - -
Sto9g2540 896 CDD NF-X1-zinc-finger 281 328 - -
Sto9g2540 896 SMART znfxneu3 345 365 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 291 310 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 723 745 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 618 650 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 660 678 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 186 204 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 507 528 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 238 257 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 SMART znfxneu3 536 581 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 CDD NF-X1-zinc-finger 228 276 - -
Sto9g2540 896 MobiDBLite consensus disorder prediction 816 835 - -
Sto9g2540 896 MobiDBLite consensus disorder prediction 1 19 - -
Sto9g2540 896 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 456 891 IPR034078 GO:0003700
Sto9g2540 896 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 13 366 IPR034078 GO:0003700
Sto9g2540 896 CDD NF-X1-zinc-finger 648 687 - -
Sto9g2540 896 CDD NF-X1-zinc-finger 335 359 - -
Sto9g2540 896 Pfam NF-X1 type zinc finger 238 256 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 186 203 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 345 363 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 517 527 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 662 677 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 724 741 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 291 309 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 Pfam NF-X1 type zinc finger 618 628 IPR000967 GO:0005634|GO:0008270
Sto9g2540 896 ProSiteProfiles Zinc finger RING-type profile. 73 140 IPR001841 -
Sto9g2540 896 CDD NF-X1-zinc-finger 174 222 - -
Sto9g2540 896 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 13 366 - -
Sto9g2540 896 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 456 891 - -
Sto9g2540 896 SUPERFAMILY RING/U-box 71 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2540 Sto-Chr9 28002619 28009050 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Sto9g2540 zf-NF-X1 62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2540 K15683 - twl:120000999 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2540 9 28002619 28009050 Sto9g2540 9 28002619 28009050 ECH