Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2508 ATGGacacttcctcttcttcctcttcggAGGGTCATAATAGTCCCGACACGATTTTCGAAGCTGATACTCCTCGAACGCCCTTAGCCGTCCGTCGAGCCCTTCAGCTCCTCCGATCCGACGACCCGGATTTTCGGCTCCAAGCCGCCCGGGATATCCGGCGCCTCACCAAGACCTCGCAGCGCTGTCGGCGCCAGCTCGCTGAAGCTGTCGGTCCGCTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTTACTTGAACCGGCTCTTCTCGCTTTGCTTAACCTTGCCGTCAAAGATGAAAAGAACAAAATCAACATTGTGGAAGCTGGTGCTTTAGAACCAATAATTAGTTTCCTCAGGTCACAGAATTGGAATCTGCGGGAGTACGCAACTGCATCTTTGCTCACTTTATCTGCCTCTACAGTCAACAAGCCAATTATTAGTGCTTCTGGAGCAATTCCTCTTCTTGTGGAGATTCTTCGAGATGGAAGCCCGCAGGCTAAAGCTGATGCCGTAATGGCTCTTTCCAACTTGTCCACATACTCAGATAATCTCAGCATCATTGTTGAAACAAATCCAGTTCCTTATATAGTCAATCTTCTCAAAGCCTGTAAAAAATCCTCAAAAACTGCTGAGAAATGCTGTGCTTTGATAGAGTCCTTGGTGGGTTTTGATGAGGGAAGAACTGTCTTAACATCTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGTAATCTCCAAAGTAGGGAGCATGCTGTAGGAGCACTATTGACTATGTGTGAAAGTGACCGGTGTAAATACCGGGAACCAATTCTTGGAGAAGGTGTAATTCCAGGACTTCTGGAGCTTACCGTTCAAGGAACACCTAAGTCTCAGTTGAAAGCACGTACCCTTTTGCAGTTACTGAGAGAGTCTCCTTATCCAAGGTCTGAAATTCAACCTGATACACTCGAGAACATAGTATGTAACCTCATATCACAGATTGATGGCGATGATCAATCTGGAAAAGCTAAGAAGATGCTTGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTCTGAGACATTTACAGCAAAGAGCTCTTGTATGTACCCCAAGTGATCTTCCTATCTCCAACTGTGCTTCTGAAGTTCATTCAAAATGA 1155 0.4545 MDTSSSSSSEGHNSPDTIFEADTPRTPLAVRRALQLLRSDDPDFRLQAARDIRRLTKTSQRCRRQLAEAVGPLVSMLRVDSPELLEPALLALLNLAVKDEKNKINIVEAGALEPIISFLRSQNWNLREYATASLLTLSASTVNKPIISASGAIPLLVEILRDGSPQAKADAVMALSNLSTYSDNLSIIVETNPVPYIVNLLKACKKSSKTAEKCCALIESLVGFDEGRTVLTSEEGGVLAVVEVLENGNLQSREHAVGALLTMCESDRCKYREPILGEGVIPGLLELTVQGTPKSQLKARTLLQLLRESPYPRSEIQPDTLENIVCNLISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPISNCASEVHSK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2508 384 MobiDBLite consensus disorder prediction 1 24 - -
Sto9g2508 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 68 110 IPR000225 GO:0005515
Sto9g2508 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 193 IPR000225 GO:0005515
Sto9g2508 384 PANTHER U BOX DOMAIN-CONTAINING 15 367 - -
Sto9g2508 384 MobiDBLite consensus disorder prediction 1 20 - -
Sto9g2508 384 Gene3D - 227 365 IPR011989 -
Sto9g2508 384 SUPERFAMILY ARM repeat 30 334 IPR016024 -
Sto9g2508 384 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 367 - -
Sto9g2508 384 Gene3D - 29 226 IPR011989 -
Sto9g2508 384 SMART arm_5 59 97 IPR000225 GO:0005515
Sto9g2508 384 SMART arm_5 181 223 IPR000225 GO:0005515
Sto9g2508 384 SMART arm_5 140 180 IPR000225 GO:0005515
Sto9g2508 384 SMART arm_5 99 139 IPR000225 GO:0005515
Sto9g2508 384 SMART arm_5 224 265 IPR000225 GO:0005515
Sto9g2508 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 110 152 IPR000225 GO:0005515
Sto9g2508 384 Pfam Armadillo/beta-catenin-like repeat 60 96 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2508 Sto-Chr9 27812599 27815341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2508 30 307 U-box Gene Family AT2G23140 34.286 1.65e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2508 - - gmx:100780954 600.127