Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2501 ATGAGAAAACCTTGCTGTGAGAAAGAAGGAACCAACAAAGGGGCTTGGTCCAAGCAAGAGGACCAAAAGCTTGTTGATTACATCCGAGCTCATGGTGAAGGGCTGCATCGGTGTGGGAAAAGTTGCAGGTTGAGATGGATCAATTATTTAAGACCTGATATCAAACATGGAAATTTTGGTCCTGATGAAGAAGACCTCATCATTAAACTCCATGCCCTCCTTGGAAACCGATGGTCACTAATAGCTGGAAGATTGCCGGGTCGTACAGACAATGAGGTAAAGAACTATTGGAATTCTCACATCCGAAAGAAGCTAATGAACATGGGAATTGATCCAAACAACCATAAGCTACATCATAGCTTTCCTTCTGCCACCCAATCATTATCTGCCGAGTCCATCAACAAACACGgccataatattaataaagcagCTGCTAATTATAATTATGATAGGGTTTCGGACTGCACTCAGAGTTGTATTGAAGAAGAAACACCAACGGCGGCTTCTTCCTGCTCCCACTTAAATCTTGACTTAACCATTGCTTTCCCACCTTCTCCTTCACTAATTCCGCCAAATTGTTCTCATCTCTCCGCCGGGACAAACGACGTCGTAATCACTGAATCCGCTCCAACTCTTATTCTATTTagataa 651 0.4178 MRKPCCEKEGTNKGAWSKQEDQKLVDYIRAHGEGLHRCGKSCRLRWINYLRPDIKHGNFGPDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLMNMGIDPNNHKLHHSFPSATQSLSAESINKHGHNINKAAANYNYDRVSDCTQSCIEEETPTAASSCSHLNLDLTIAFPPSPSLIPPNCSHLSAGTNDVVITESAPTLILFR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2501 216 Gene3D - 58 129 - -
Sto9g2501 216 SMART sant 55 103 IPR001005 -
Sto9g2501 216 SMART sant 12 52 IPR001005 -
Sto9g2501 216 SUPERFAMILY Homeodomain-like 11 97 IPR009057 -
Sto9g2501 216 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 216 - -
Sto9g2501 216 PANTHER MYB TRANSCRIPTION FACTOR 2 216 - -
Sto9g2501 216 Pfam Myb-like DNA-binding domain 13 50 IPR001005 -
Sto9g2501 216 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Sto9g2501 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 50 IPR017930 -
Sto9g2501 216 Gene3D - 13 55 - -
Sto9g2501 216 CDD SANT 58 101 IPR001005 -
Sto9g2501 216 ProSiteProfiles Myb-like domain profile. 8 101 IPR001005 -
Sto9g2501 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2501 Sto-Chr9 27765217 27766090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2501 2 182 MYB Transcription Factor Family AT4G09460 50.739 7.36e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto9g2501 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2501 K09422 - jre:108988219 266.544