Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2496 atGCCGAGTCACAGTCCGCCATCCTACAGTCATTCAAGAAGAGGATCAGGTGGTGGAAGGAGAAGCCCTGATAGGAGGGGATCTGGCGGAGGCAGACGCAGGGAACAAAATCATGGAACCCTTTTGGTTAGAAATTTTCCCTTCGATTGCCGACCTGAGGAACTTCGAGTTCCATTTGAGCGATTTGGACCTGTCAGGGATGTCTACATGCCCAAGGACTATTACACCGGAAAGCCTCGAGGATTTGCCTTTGTGCAATATATAGATCCATATGATGCTTCAGAGGCACATTACCGTATGAATGGACATATCTTTGCTGGAAGggaaatatctgttgtttttGCTGTGGAGACAAGAAAAAGACCAGAGGAAATGCGTCAAAAGGCGAGGCCCAGTTCTTACAGAAGACCTGTAGACTCTGGGGGGCGAAAGCCATCTTACCAtgGTCGTTCTCGATCTCGATCACGCTCAGTTCCCAGATCACATTTCTCACATCATCACTCTCGATATAACTCAAGGTCTTTTTCTCCTGCTCCAAGAAGGCCAAGTGACCGCTCTCTCTCCTCTAGAAGGCAAGCAGAGCATCCTGGATCACCAAgGTATTTTTCTCCTGCTCCAAGACGGCGAAGTGACCACTCTCTCTCCCCTAGAAGGCAAGCAGAGCATCCTAGATCACCAAGgtcttttctttccctaagacAGCGAAGTGACTACTCTGGTTCCCCTAGAAGGCAAGCAGAGGATCCTCCATCACCAAGGTCTCTTTCACCTGTCCCAAGGCTGCAATATCAATATGACGACACTGTTTCCCCTAGAAGGAAAAGAGAGCACCCTAGATCACGAAGAGGTCCTCCTGGGGAGCCAGAGCACCCTAGATCACGAAGAGATCCTCCTGGGGAGCCAGAGCACCCTAGATCACGAAGAGATCCTCCTGGGGAGCCAGATGGTGATAAAAAACGAAGTTCATATTCTCTAGATtggttttctttcctttcttggGTTGATCTTGTTTTCATACACTCTTATCGTGCAGAAGGAAACATATGTACAAGTCTGGAACTGCACAAGGCCAGTGGAGGCAATTGCCACGTAGAGCATCAAGATCTCCCATTGGATCTAGATCAAGGTCAGCTGATTTGTCACCCGGGCATAAAAGATGAGATGGTTGGTCCTATGCTGTGCAGTCTTCAGAACGATTTCTCTTCTATATATCAGGCACCTAAGTGA 1227 0.4629 MPSHSPPSYSHSRRGSGGGRRSPDRRGSGGGRRREQNHGTLLVRNFPFDCRPEELRVPFERFGPVRDVYMPKDYYTGKPRGFAFVQYIDPYDASEAHYRMNGHIFAGREISVVFAVETRKRPEEMRQKARPSSYRRPVDSGGRKPSYHGRSRSRSRSVPRSHFSHHHSRYNSRSFSPAPRRPSDRSLSSRRQAEHPGSPRYFSPAPRRRSDHSLSPRRQAEHPRSPRSFLSLRQRSDYSGSPRRQAEDPPSPRSLSPVPRLQYQYDDTVSPRRKREHPRSRRGPPGEPEHPRSRRDPPGEPEHPRSRRDPPGEPDGDKKRSSYSLDWFSFLSWVDLVFIHSYRAEGNICTSLELHKASGGNCHVEHQDLPLDLDQGQLICHPGIKDEMVGPMLCSLQNDFSSIYQAPK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2496 408 SMART rrm1_1 40 113 IPR000504 GO:0003723
Sto9g2496 408 SUPERFAMILY RNA-binding domain, RBD 36 143 IPR035979 GO:0003676
Sto9g2496 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Sto9g2496 408 Gene3D - 3 131 IPR012677 -
Sto9g2496 408 MobiDBLite consensus disorder prediction 17 39 - -
Sto9g2496 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Sto9g2496 408 MobiDBLite consensus disorder prediction 119 133 - -
Sto9g2496 408 MobiDBLite consensus disorder prediction 267 320 - -
Sto9g2496 408 MobiDBLite consensus disorder prediction 119 320 - -
Sto9g2496 408 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 20 219 - -
Sto9g2496 408 PANTHER OS02G0252100 PROTEIN 20 219 - -
Sto9g2496 408 MobiDBLite consensus disorder prediction 147 169 - -
Sto9g2496 408 MobiDBLite consensus disorder prediction 1 39 - -
Sto9g2496 408 MobiDBLite consensus disorder prediction 205 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2496 Sto-Chr9 27730812 27734308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2496 20 116 Eukaryotic Initiation Factors Gene Family AT3G11400 32.990 3.23e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2496 K12900 - gmx:100792397 218.779