Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2482 ATGGCTTCGGGGACATCCTCTTATTGGTGCTATAGATGCAGTCGATTCGTTAGGGTATCGCGGCAGGACACGGTGGTTTGTCCAGATTGTGACAGTGGGTTTGTGGAAGAGATCGAACAACCGCCTCGGCCCGTCCACGTCGACTCTCGCCGGCGGAGGTTCCCTGGGGCTGCGATGTACATGATAGGCCACCGCCCCACTTCCGATCAGAATTCCCGCCCGCCGCTTCGCAGAACCCGGAGGAACGGCGGTGATCGTTCGCCGTACAATCCGGTCATCGTGCTCCGTGGATCGCCGGATGGGTCGAGACACGAAGGGGAAGGAGAGAGTCGTGGTGGGTTTGAGCTTTATTACGATGACGGCGCTGGTTCTGGGCTTCGGCCTTTGCCACCGAGTATGTCGGAGTTTCTTTTGGGATCTGGATTCGACAGGCTTTTGGAACAGCTTTCTCAGATCGAAATCAACGGGATTGGTCGATGCGAGCAGCCGCCAGCATCAAAAGCCGCGATTGATTCACTACCCACGATTGAGATTGATGAGAGTCATTTGGAGTCGGAATCACATTGTGCCGTTTGCAAGGAGGCTTTTGAATCGGGCACCACAGCTAGAGAGATGCCCTGTAAGCATATATACCATCCCGAATGTATTCTTCCATGGCTCGCTCTTCGCAATTCTTGTCCTGTTTGCCGCCATGAATTGCCATCTGATCATTCCCACAACACTAGCCCAACAGGAGGCCAGTCACAAGTCGCGTGGAACGATGAAGAGAATGTTGGATTGACGATTTGGAGGCTCCCTGGAGGTGGGTTTGCGGTGGGGAGATTTTCTGGTGGAAGAAGAGGCGCTGAGAGGGAACTTCCTGTTGTGTACACAGAAATGGATGGGGGGTTTAACAATGGAGGTGAGCCAAGGAGGATTTCGTGGTCTTCTAGAGGAAGCAGAGGGAGGGAGATTGGTGGATTTCGCAGGATGTTGCGGAATTTGTTTGTTTGCTTTGGAGGAGTTCGATCTCAACCCTCTCGTGGTAGAGAATCTCGACCTGTGAGGATATCATCTCATTCGGATTTGAATACTTCTTCTCCACGTTCACGCAGGACTTGGTCTATGGATGTAAACAGTGGAGTGAGATCATGGTAA 1137 0.5259 MASGTSSYWCYRCSRFVRVSRQDTVVCPDCDSGFVEEIEQPPRPVHVDSRRRRFPGAAMYMIGHRPTSDQNSRPPLRRTRRNGGDRSPYNPVIVLRGSPDGSRHEGEGESRGGFELYYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRCEQPPASKAAIDSLPTIEIDESHLESESHCAVCKEAFESGTTAREMPCKHIYHPECILPWLALRNSCPVCRHELPSDHSHNTSPTGGQSQVAWNDEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGSRGREIGGFRRMLRNLFVCFGGVRSQPSRGRESRPVRISSHSDLNTSSPRSRRTWSMDVNSGVRSW 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2482 378 Pfam Protein of unknown function (DUF1117) 258 346 IPR010543 -
Sto9g2482 378 MobiDBLite consensus disorder prediction 351 378 - -
Sto9g2482 378 MobiDBLite consensus disorder prediction 61 112 - -
Sto9g2482 378 SUPERFAMILY RING/U-box 169 237 - -
Sto9g2482 378 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Sto9g2482 378 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Sto9g2482 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 329 - -
Sto9g2482 378 MobiDBLite consensus disorder prediction 336 378 - -
Sto9g2482 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
Sto9g2482 378 SMART ring_2 189 229 IPR001841 -
Sto9g2482 378 CDD RING-H2_RNF126_like 189 230 - -
Sto9g2482 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 329 - -
Sto9g2482 378 Pfam Ring finger domain 188 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2482 Sto-Chr9 27623752 27624888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2482 126 236 C3H Transcription Factor Family AT5G01980 42.342 2.21e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2482 - K11982 gmx:100807324 548.125