Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2430 ATGCATGGGAACAAATGGGCGGCAATTGCAAGGCTTCTGCCAGGTAGAACAGATAATGCAATAAAAAATCACTGGAATTCTACACTTAAGCGAAGGTGCATTGATCTGGGAAGATATGTTCCAGTGGGTGCTGGCATGATGGAAGATGGCAGCATTGAGGCCCTTGACAAAACAAAGGCATCCTCTGAAGAAACCATGTCTGTAGGGGATATCAATTCATTGAATCCTGCAGAAGTTAAAAATGCAATGATGGATAGTGGATTTAAGCAGTATGAAGACAATCCTCAAACAAAAAATGGGTCTGAAGTAGAGGAACGTTCCACCCTTTGTCGGCCAGCAGCGCGTGTTAGTGCATTTAGTGTCTATAATCCCACTAGCAGGCCAACATATTCAAAGATGCTCCCAATGCAGGGCCCTTTGGTCCAATCTTCGAAAGTGAAAGTAGGATCCTGCAAGCTAATAGATGATGTTGGCTGTGAGCCCATGGTTCCATTGCAATGCGGTCATGGCTGCTGTTCAGGGGGAAATCACTCTCATGGTTCTCTATTAGGCCCTGATTTTGTAGACTATTTGGAGCCCCCCTCTTTGTCAAGTCATGAATTGATCTCAATAGCTACAGATTTGAACAACATTGCTTGGATCAAGAGTGGCCTTGAGAATCATGGTGCCAGAGTAACTGAGAATACAGCAAACATGACAGCAACCGGCAGTTTTGCTGCTTCTGCCTTTCAAAATGGCTTCTTTGAAGAGGGAGCAAGCAAGTTTGTGGACAATGGTTGTCGACGGAGCTCCGTCGGCGACGACGGTGGAGGCGGCGGCTGTGATGGGGATTCTTTAGAAAGGAGTGAGAAGGCGGATGTGGAGATTGAGGGGGAGTGTGAAAAAGAGAGGGGATCCTGTGCATCGGAGTGTTCGGTGGAAGTAGATCTGAGCGGTGCAGTGGGTGAGGTTAAGGTACATTTGGATAAGGTGGAGAGGGATTGTAGGATTTGCCATCTGAGCATGGATATGACCAATCATGAGTCTGGGACTTCCATTGAGCTTGGATGCTCTTGCAAGGATGATTTGGCTGCTGCCCACAAACACTGTGCTGAGGCTTGGTTCAAAATCAAGGGTGATAAAACCTGTGAAATCTGTGGATCAATAGCACACAATGTAGCTGGTGCTTTTGAAGTTGAAACAACAGAACAATGGAACGAAGCAAGTGACGCGTCCACGGTTGCGCCGACCGGACTTGTGAGCCCTTCGCAAGCTCGAAGTTTCTGGCAGGGACATAGCTTGTTCATCTCCGAACTCACAAAGCTGAATGTGATGAAGAAGCTGTGCCCCAACCTTGAGCGAGAAGATGGGCTGGAAACGGTGCTTGAGGTTCCAATCCCCGATGATATTTGCAGAAACAAGAGTGGAAAAAGCAGAGCATGGCATCAGATGAAGTCGTGGATGAAGCCAAACGCAGAGTCCAGATCATCTTCAGGTGGCATTGGAGAGATCAAGTTAATGCTTGGAGTGGTGGGAGCCCCATTAATCCCCTTCCCTATCTCTATGATCTCCCACAACCAGGCCTTGTTTCGAAGTATGAACAAAGACCCACACATTGAGGCATCGATGGCGAAATACATAGTGAAGCAGTATGTGGCGGCGGTGGGAGGTTTGAAATTGAAATCAATAGAAAGCATGTACGCGGTGGGGGAGAAGGGTGCGGAGCTATGGTGCTTGGAGATGGTTCTGTCTGGGTATAAGATCAGCGCTGGGAGTGACGGCAATCTTTCCTGGAGACAGACCCCGTGGCACCATTCCCATGCTTCTCGCGGCCCACCTACACTTCTCAGGCGCTTCCTTCAGGGCATTGATCCAAACTCCACAGCCAATCTATTCAGCAACTCAGTATGCATTGGAGAGAAGACAGTGAACGACGAAGAATGTTTCGTACTAAAACTAGAAGCCAAGCCATCATCACTTCGAGCAAGAAGCAGCAGCAACGCTGAGATAATTCGGCACACCATGTGGGGCTATTTCAGCCAAAGAACAGCTCTCCTGGTTCAGCTCGAGGACTCCCATTTGGTCAGAATCAAATCCCACTCCTCAAACCACACCGTATACTGGGAAACCACCATGGAGTCATTCATCCAGGACTACAGAATGGTAGATGGCATCAATATAGCACACGCTGGGAAGACCTTGGTGTCCCTCTTGAGGTTCGGTCATGGCCCTAAATCCCATTCGAGGACACAAATGGAAGAGGCCTGGCAGTTGGAAGAAGTGGATTTTAACATTAAGGGTTTGTCTATTGATTGCTTTTTACCTCCGGGTGACTTGAAGaaggaggaaaagaaaggagaagcAAAGGGTGGACTCATTGCTAGAAATAATAAGTTACCGGATAAGATTCGCTCCGCGTCTTTTAGGATTCATGCTTCCAAAATAGCAGCTATTAATCTGGATGATTCATGTACCAGTGAAAGCGATGAAGACCtctaa 2478 0.4718 MHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCIDLGRYVPVGAGMMEDGSIEALDKTKASSEETMSVGDINSLNPAEVKNAMMDSGFKQYEDNPQTKNGSEVEERSTLCRPAARVSAFSVYNPTSRPTYSKMLPMQGPLVQSSKVKVGSCKLIDDVGCEPMVPLQCGHGCCSGGNHSHGSLLGPDFVDYLEPPSLSSHELISIATDLNNIAWIKSGLENHGARVTENTANMTATGSFAASAFQNGFFEEGASKFVDNGCRRSSVGDDGGGGGCDGDSLERSEKADVEIEGECEKERGSCASECSVEVDLSGAVGEVKVHLDKVERDCRICHLSMDMTNHESGTSIELGCSCKDDLAAAHKHCAEAWFKIKGDKTCEICGSIAHNVAGAFEVETTEQWNEASDASTVAPTGLVSPSQARSFWQGHSLFISELTKLNVMKKLCPNLEREDGLETVLEVPIPDDICRNKSGKSRAWHQMKSWMKPNAESRSSSGGIGEIKLMLGVVGAPLIPFPISMISHNQALFRSMNKDPHIEASMAKYIVKQYVAAVGGLKLKSIESMYAVGEKGAELWCLEMVLSGYKISAGSDGNLSWRQTPWHHSHASRGPPTLLRRFLQGIDPNSTANLFSNSVCIGEKTVNDEECFVLKLEAKPSSLRARSSSNAEIIRHTMWGYFSQRTALLVQLEDSHLVRIKSHSSNHTVYWETTMESFIQDYRMVDGINIAHAGKTLVSLLRFGHGPKSHSRTQMEEAWQLEEVDFNIKGLSIDCFLPPGDLKKEEKKGEAKGGLIARNNKLPDKIRSASFRIHASKIAAINLDDSCTSESDEDL 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2430 825 SUPERFAMILY Homeodomain-like 2 33 IPR009057 -
Sto9g2430 825 PANTHER LIPASE 438 564 IPR006873 -
Sto9g2430 825 PANTHER LIPASE 565 818 IPR006873 -
Sto9g2430 825 CDD RING_CH-C4HC3_MARCH 328 380 - -
Sto9g2430 825 Pfam Myb-like DNA-binding domain 1 28 IPR001005 -
Sto9g2430 825 Pfam Protein of unknown function (DUF620) 557 769 IPR006873 -
Sto9g2430 825 CDD SANT 2 29 IPR001005 -
Sto9g2430 825 SUPERFAMILY RING/U-box 325 382 - -
Sto9g2430 825 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sto9g2430 825 ProSiteProfiles Myb-like domain profile. 1 29 IPR001005 -
Sto9g2430 825 PANTHER LIPASE 565 818 - -
Sto9g2430 825 PANTHER LIPASE 438 564 - -
Sto9g2430 825 Gene3D - 1 49 - -
Sto9g2430 825 SMART ringv_2 327 380 IPR011016 GO:0008270
Sto9g2430 825 Pfam RING-variant domain 328 379 IPR011016 GO:0008270
Sto9g2430 825 Coils Coil 825 825 - -
Sto9g2430 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 387 IPR013083 -
Sto9g2430 825 ProSiteProfiles Zinc finger RING-CH-type profile. 320 386 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2430 Sto-Chr9 27276518 27285593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2430 1 232 MYB Transcription Factor Family AT3G55730 42.972 6.95e-51 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto9g2430 DUF620 6.6e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2430 - - gmx:100782214 543.888