Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2420 ATGTCTTTTATCGGTACCCAACAGAAGTGCAAGGCTTGTGAGAAAACGGTCTACCCTGTTGATCAGCTATCCGCCGATGGCACTTGTTACCATAAGGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACATTGAAGCTAAGCAACTATTCCTCAATGGAAGGTGTTCTCTATTGTAAGCCTCATTATGAGCAGCTCTTCAAGGAGACAGGCAGTTTCAACAAGAATTTCCAGTCACATGTTATTGTTAAAAGTGGCCTCTTTTGTTTGTTCCAGACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGAACGCAAGAAAAGTGTGCTACATGTGGTAAAACTGCTTATCCTTTGGAGAAGGTAACAGTGGAGGGCCAGTCCTACCACAAATCATGTTTCAAGTGTTCACATGGCGGCTGTTCTCTATCTCCATCAAATTATGCTGCCCTTGAAGGCATTTTGTACTGCAAGCACCATTTTTCCCAGCTCTTTAGGGAGAAAGGGAGCTATAATCATCTCATCAAGTGTGCATCAATAAAACGAGCGGCAGCCCCTGCTCCAGAATCTTAA 573 0.4433 MSFIGTQQKCKACEKTVYPVDQLSADGTCYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFNKNFQSHVIVKSGLFCLFQTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFREKGSYNHLIKCASIKRAAAPAPES 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2420 190 Gene3D Cysteine Rich Protein 4 74 - -
Sto9g2420 190 Gene3D Cysteine Rich Protein 103 173 - -
Sto9g2420 190 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Sto9g2420 190 SMART lim_4 108 160 IPR001781 -
Sto9g2420 190 SMART lim_4 9 61 IPR001781 -
Sto9g2420 190 PANTHER OS06G0237300 PROTEIN 1 190 IPR045268 GO:0051015
Sto9g2420 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Sto9g2420 190 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 190 - -
Sto9g2420 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Sto9g2420 190 Pfam LIM domain 10 65 IPR001781 -
Sto9g2420 190 Pfam LIM domain 109 164 IPR001781 -
Sto9g2420 190 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Sto9g2420 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Sto9g2420 190 CDD LIM1_SF3 6 68 - -
Sto9g2420 190 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Sto9g2420 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2420 Sto-Chr9 27221555 27223803 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto9g2420 LIM 3.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2420 K09377 - csv:101206678 338.576