Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2404 ATGGATGTGATAAAGACGCAGCAAATCTCATCGAGACCCATCGAGAAGGTCATAGTTCACCCACTCGTCTTGCTGAGCATAGTTGACAACTATAATAGGGTCGCTAAGGACACCCGCAAACGTGTCGTTGGTGTCTTGCTAGGAAGTTCTTTCAAGGGCACCGTTGATGTTTCCAACAGCTACGCCGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAACAAATGTTTTCCATGTTCAAAAGAATAAATGCAAAGGAGCATGTCGTGGGATGGTACAGCACCGGTccaaaaataagagaaaatgacCTGAATATTCATGGCCTATTTAATGAGTATAATGCCACTCAGAAAAGCCAGAAGGTCTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTGAGAGACGTCAAGGATACAACCATCAGCACCCTTGCAACAGAGGTGAGTGGAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGGAAGCTTCCTTTAAACCATGAGATTCTATACCATCTGCAGGATGTCTTCAACCTTCTACCAAATCTTAATGTTGCTGATCTGATCAAGGCTTTTTCAGTTAAAACAAACGATATGATGCTGGTAATATACCTATCATCTCTAATCAGAAGTGTAATTGCACTCCACAACTTGATTAATAACAAGATGCTCAATAAAGAACATGAAAGGGCAGAAGACTCGAAACCAGTGGCTGTAACAAGTGCAGCTGGAAGTTAG 840 0.4167 MDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHEQMFSMFKRINAKEHVVGWYSTGPKIRENDLNIHGLFNEYNATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFSVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKPVAVTSAAGS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2404 279 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 124 - -
Sto9g2404 279 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 123 279 - -
Sto9g2404 279 CDD MPN_RPN7_8 15 264 IPR033858 GO:0005838
Sto9g2404 279 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 123 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sto9g2404 279 SMART pad1_6 16 147 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sto9g2404 279 Pfam Maintenance of mitochondrial structure and function 143 254 IPR024969 -
Sto9g2404 279 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 1 124 - -
Sto9g2404 279 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 123 279 - -
Sto9g2404 279 ProSiteProfiles MPN domain profile. 17 159 IPR037518 -
Sto9g2404 279 Gene3D Cytidine Deaminase, domain 2 9 124 - -
Sto9g2404 279 Gene3D Cytidine Deaminase, domain 2 125 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2404 Sto-Chr9 27139280 27143319 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2404 19 217 Eukaryotic Initiation Factors Gene Family AT2G39990 27.074 2.47e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2404 K03038 - gmx:100790393 511.916