Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2394 ATGGCCTCTACCTACCGTGATCGCACATCGGAGTTCCGATTGCTTTCTCAGACTCTGAAGAAGATCGAGGGTGTCACACCACCTAATCAAACTGAAAATGTTCCTTCTACACCCAAACAATCTACTCCCACATCATCCTATTCTAGATCTGAATTCAACAGGAAGGCCTCTCGAATCGGGTTGGGTATCCATGAAACCTCCCAGAAGATTGCAAGGCTTGCACAATTGGCAAAGAAGTCATCAATGTTTAATGATCCCATTGTGGAAATACAAGAATTAACGGTTTTGGTTAAGAATGACATCACGGCATTGAATTCAGCTCTATCAGATTTACAAACTATTCAAAACATGGAGATAGCTGATGGAAATTATTCAGAGGATAGAATTGTTCATTCAACAGCTGTTTGTGATGACTTAAAGAACAAACTTATGGGGGCAACTAAGCAGCTTCAAGATGTGTTAACTACTAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAgcagatattttccaagaatgcATCAAGAGAAAAGCCTTTCCAGCATCGGTCAAAGTCAGTGACTGAGCCACCCCCTTGGTCAAATTCATCTGAAAGCTCGGAACAAACATCAGCctcAAGCAGATTACTTTCAAATGAAGTTCCAGCTGGAAATCAATTAAGACGAAGGTTGGCTGTGGACAACACTCCGTCTCAGCAAATGGAAATGTCTATGGTACAGCAAGTTGTCCCACGGCAAGAAAATTATAGTCAAAGTCGGGCAACAGCTCTGCACAACGTGGAATCTACTATAACAGAACTTAGTGGGATCTTCACTCATTTGGCTACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGATGATAACATGGATGAGTCATTGGCAAATGTTGAAGGGGCTCATAATTCTTTATTGAGGCATCTCAACCAAATATCCTCAAACAGGTGGCTTCTTGTCAAGATATTTGCCATTTTGATACTTTTTCTGCTAATCTTCATATTCTTCGTGGCCTAA 1023 0.4018 MASTYRDRTSEFRLLSQTLKKIEGVTPPNQTENVPSTPKQSTPTSSYSRSEFNRKASRIGLGIHETSQKIARLAQLAKKSSMFNDPIVEIQELTVLVKNDITALNSALSDLQTIQNMEIADGNYSEDRIVHSTAVCDDLKNKLMGATKQLQDVLTTRTENIKAHENRKQIFSKNASREKPFQHRSKSVTEPPPWSNSSESSEQTSASSRLLSNEVPAGNQLRRRLAVDNTPSQQMEMSMVQQVVPRQENYSQSRATALHNVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHNSLLRHLNQISSNRWLLVKIFAILILFLLIFIFFVA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2394 340 CDD SNARE_syntaxin5 251 323 - -
Sto9g2394 340 PANTHER SYNTAXIN-31 4 339 - -
Sto9g2394 340 MobiDBLite consensus disorder prediction 164 185 - -
Sto9g2394 340 Pfam SNARE domain 285 336 IPR000727 -
Sto9g2394 340 MobiDBLite consensus disorder prediction 188 215 - -
Sto9g2394 340 SUPERFAMILY t-snare proteins 48 303 IPR010989 GO:0016020|GO:0016192
Sto9g2394 340 ProSitePatterns Syntaxin / epimorphin family signature. 254 293 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sto9g2394 340 MobiDBLite consensus disorder prediction 21 51 - -
Sto9g2394 340 PANTHER SYNTAXIN 4 339 IPR045242 -
Sto9g2394 340 SMART tSNARE_6 243 310 IPR000727 -
Sto9g2394 340 MobiDBLite consensus disorder prediction 164 221 - -
Sto9g2394 340 Gene3D - 46 303 - -
Sto9g2394 340 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 248 310 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2394 Sto-Chr9 27095829 27098842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2394 1 340 SNARE and Associated Proteins AT5G05760 62.890 2.40e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2394 K08490 - gmx:100777383 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2394 9 27095829 27098842 Sto9g2394 9 27095829 27098842 ECH