Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2388 TTGCGGTTGTTATTGCATGCAGATTTACGAGATGACAGGCAATACTTGATTGATCATCCTGGTGCTACACCCTTAAGTACTGCCCAGGGAGAAGAATTGAAGAAGGCAATTGGTGCTGCTGTTTACATAGAATGCAGCTCAAAGACTCATTTTCTACAGTTCTGGGGTAGCTTTAACATCATATTCAAGGAAAATTGCTTTGAAGTCTTCTTGAGTGAATCAACTAGTAAAGACAGAAAATCTTCCCATATCAATTTTCCTCTCGATTTGAAGACGACTGTAGCCAATTTTGAGACTATCTCACACAAAAGAAGGAGCTCTGTTTCTGAGCATTTTATAGCTAAGGCATTAAGCAGCTTGCTTTCTATGAGTTCCAACGTCGTGCTATTAACGGAGATGAAGTCTACAGAATGTGGTGGCACTGGTGCATACTTCCTGGGGGGTGATGGAGGGTCTGACTTCGGGGGTGGTGCAGGCGGGTGTGGCGACTCTTCCCCTCGTCGGGATTTCTTGGAGGCTGGACGCAGGGATTCTGCATTGTCTGTCCTTTTTTGTTTGGGAGGGGGTGGCGGTAAGGACCCTCGTCGGGATTTCTTGGAAATTGGAGGCGATGTTTTTGCATTGTCTAACCTCCTTTTCTTTGAAGGTGGTGGTGCAGTTTTTGGCGGTAAGGACCCTCGTCGGGAGGGTTGTGGTGGCGATTGTGAAGGCCGTCTTGTAAGTGAAGCCATTGTTGCGAAAAAGCCAAGGTTCTTGAAGGTGACCACAATGAAGCTTCACAAATCTTACTTATGTGCACCTTGTTCTATCCAACTTGAAATGATCCTTCCCTCCTCGTTGAACTTACTGTGGCTCCTGCTGTTACTGTTACTTCCTGTCCCTATTGCTTGTGCTCCAAAAAATGAGACTGACAGGTTGGCTTTACTCAAATTCAGAGAATCCATCACCAATGATCCAAATGGAGTTTTGAGGACGTGGAACAACTCAATTCACTTCTGCAATTGGCTTGGGGTTACATGCAGCAACAAGCACCAGAGAGTCATAGCCTTAGATCTTGAAGGATACAAGTTAATTGGATCAATTTCTCCTTACATAGGCAATCTCTCTTTTCTTAGATCCCTCAATCTCCAAAATAACAGCTTGCATGGCCAAATTCCACATGAATTTGGTCATTTGTTTCGTCTGCAAGCTCTTGAACTTGCCAATAACACATTGACAGGGGATATTCCAACCAGCTTGGCCAACTGCTCTGCACTCCAAGTCATAGACCTAGCAAGGAATGAGCTTACAGGGACTATTCCCATCCAGTTTGGCTCATTTCCAATACTTGAAACTCTTTATCTTGATAGGAACAATCTCACAGGAGGCTTACCACCTTCTTTAGGAAATATTTCATCACTCAAATATTTCGCTGCAGCATCCAATTATTTGGAGGGAGTTATTCCAGATAACCTTGGACTTCTGAAAAATCTAGTCCGGTTCTTGGTTGGTGGCAATATGCTATCTGGTCTTGTCCCTTCTTCCCTTTACAATATATCTTCCCTCAATTTCTTCTCAATCGCAGTGAACCAACTAAATGGCACTCTACCACAAACCATTGGCTTCACACTCCCAAACCTCCAGGCAATTGAATTTGGGGCTAATCAACTTTCTGGGCCCATTCCTATTTCATTATCCAACATTTCTGGTCTTCAAGTCTTTGACATCTATGGCAATAATTTTGTTGGACCAGTTCCAAACAACCTGGGAAATTTACAAGATCTTTGGTGGCTAGGATTTGGGCAAAATCATTTTGGGAGCAACTCAAGCAAGGACCTAGCTTTCTTAACTTCTCTAGTGAACTGCAGCAAATTGGAATACTTCGATCTGGGCTCGAACAATTTTGGAGGTGTTTTGCCTGCAACAATAGGCAATCTCTCAACCCAGGTCACACAGATGTATTTTGATTTCAATAAAATAGTTGGTAGCATCCCAGATGAAATTGGAAATCTGATAAACTTGGCAGTCTTAACTATGGAGGATAACCTCCTCACAGGCTCCATTCCCACTTCTTTTGGTAATTTCCAGAAGATGCAAGTGATGTCTCTCAGTGGCAACAGATTAACTGAACAGATTCCATCCTCCATAGGAAATCTCACCATGCTGAATAAGCTATTCTTATACAACAACTTACTTGAAGGGAGCATTCCTTCAAGTATGGGAAACTTAGTTAATTTGCTATACTTGGACATGTCACAGAATAACCTCAGTGGAGCTATTCCAAGCCAGGTAATTGGACTATCCTCCTTATCACAACTTCTCAACTTATCAGGAAACTCATTAAGTGGCAATCTACCCAAGGAAGTAGGCAATCTGAGAAATATTAACTCGTTGGATCTCTCAGAAAATAACTTGTATGGTGAGATTCCTGAAACCATTGGAGATTGTGTAAGCCTCGAATATCTTTACCTGCAGAGGAATTCCTTTCAAGGTAATATACCTTCAACCTTGGCTACATTGAGTGGTCTTCATGTTTTAGATCTCTCACGAAACAACCTCTCCGGGGAAATCCCAAAAGGTCTTGAGAAATTTCCTCCTTCTGTATATTTCAACTTTTCATTCAATAATCTTGAGGGTGAGGTGCCAAATGCAGGAGTTTTCAAAAACGCTAGTGCCAACTCAGTAACTGGAAATAATTTACTTTGTGGAGGTGTCCAGGAATTGCAGCTACCCCCATGCCCTGTCAAAGAGATAAGACAGAGTAAAAGCCATAAAATGAAGCAagtcattataattatttgtgtGGTAGTATTTTGCATTCTATTGGCAACATTATTTGCTATATACTGGATAAGAAAATCAAAGAAATCACGTTCTGGTTCCTCAACAACTGAGGATGCCTCCAAGGTTTCATACAGAAAGCTTCATCAGGCAACTGAAGGCTTTTCTCCCAAAAACTTGATAGGATCTGGTGGGTTTGGTTCTGTATATAAAGGAACTTTTGATTCAGAGGAAAGAGCAGTGGCCATAAAGGTCCTCAACCTCCAGAAGAAAGGAGCTTCGAAGAGTTTCATGGTTGAATGCAATGCCTTAAGAGGTATCCGACATCGAAACCTTGTCAAGATCTTAACATGTTGCTCCAGCACTGATTACAAAGGCAATGATTTCAAAGCTCTAGTCTTTGATTTCATGGCAAATGGAAATTTGGATAAATGGGTACATCCAGACAATGGTGGAGAAGATGTACTATCATTAAGCCTTcttcaaagactaaatattgCAATTGATGTAGCATCCGCTATACACTATCTCCACTACGAATGTGAACAACCTATCATTCATTGTGATTTAAAGCCCACCAACATTCTGCTTGATTCTGATATGGTTGCTCATGTCAGTGATTTTGGTTTAGCAAGACTTGTTCTTGCTACCAATCAAATTAGTCAAAATCAAACCAGCTCTATTGGACTAAAAGGCACTGTAGGATACGCGGCTCCAGAGTATGGAATAGGAGGCGAGGCATCAATGGAGGGAGATGTATACAGCTTTGGGATCCTATTGTTGGAGATGTTCACCAGAAAAAGACCTACCCATGAAACGTTCACAGATGGTTTCAATCTTCATAATTATGTCAAACTCGCATTGCCCCACAACCTTGTTGAAATAGTTGACCCAATTCTTCTCCAAAGAGACGAACAAGAGATGAACGAAAAAGGAGAGGCAGAGAGCCATGTGAATCACAGCCACACCAAGAAGGATGCTGAAATGCACGAGTGTTTAATATCGGTTTTCCAATTAGGACTTACTTGCTCAATGGAGTCCCCAAAGGAAAGGATTACTATGAAGATTGTTATCCACCAACTTCATCGCATCAAGAATGAGCTTCTTGCCACTTGTGAACACGCAGGCCACGTGCACAGCAATCGCAGAAGCAGAGCCATTAACTGA 3927 0.4171 LRLLLHADLRDDRQYLIDHPGATPLSTAQGEELKKAIGAAVYIECSSKTHFLQFWGSFNIIFKENCFEVFLSESTSKDRKSSHINFPLDLKTTVANFETISHKRRSSVSEHFIAKALSSLLSMSSNVVLLTEMKSTECGGTGAYFLGGDGGSDFGGGAGGCGDSSPRRDFLEAGRRDSALSVLFCLGGGGGKDPRRDFLEIGGDVFALSNLLFFEGGGAVFGGKDPRREGCGGDCEGRLVSEAIVAKKPRFLKVTTMKLHKSYLCAPCSIQLEMILPSSLNLLWLLLLLLLPVPIACAPKNETDRLALLKFRESITNDPNGVLRTWNNSIHFCNWLGVTCSNKHQRVIALDLEGYKLIGSISPYIGNLSFLRSLNLQNNSLHGQIPHEFGHLFRLQALELANNTLTGDIPTSLANCSALQVIDLARNELTGTIPIQFGSFPILETLYLDRNNLTGGLPPSLGNISSLKYFAAASNYLEGVIPDNLGLLKNLVRFLVGGNMLSGLVPSSLYNISSLNFFSIAVNQLNGTLPQTIGFTLPNLQAIEFGANQLSGPIPISLSNISGLQVFDIYGNNFVGPVPNNLGNLQDLWWLGFGQNHFGSNSSKDLAFLTSLVNCSKLEYFDLGSNNFGGVLPATIGNLSTQVTQMYFDFNKIVGSIPDEIGNLINLAVLTMEDNLLTGSIPTSFGNFQKMQVMSLSGNRLTEQIPSSIGNLTMLNKLFLYNNLLEGSIPSSMGNLVNLLYLDMSQNNLSGAIPSQVIGLSSLSQLLNLSGNSLSGNLPKEVGNLRNINSLDLSENNLYGEIPETIGDCVSLEYLYLQRNSFQGNIPSTLATLSGLHVLDLSRNNLSGEIPKGLEKFPPSVYFNFSFNNLEGEVPNAGVFKNASANSVTGNNLLCGGVQELQLPPCPVKEIRQSKSHKMKQVIIIICVVVFCILLATLFAIYWIRKSKKSRSGSSTTEDASKVSYRKLHQATEGFSPKNLIGSGGFGSVYKGTFDSEERAVAIKVLNLQKKGASKSFMVECNALRGIRHRNLVKILTCCSSTDYKGNDFKALVFDFMANGNLDKWVHPDNGGEDVLSLSLLQRLNIAIDVASAIHYLHYECEQPIIHCDLKPTNILLDSDMVAHVSDFGLARLVLATNQISQNQTSSIGLKGTVGYAAPEYGIGGEASMEGDVYSFGILLLEMFTRKRPTHETFTDGFNLHNYVKLALPHNLVEIVDPILLQRDEQEMNEKGEAESHVNHSHTKKDAEMHECLISVFQLGLTCSMESPKERITMKIVIHQLHRIKNELLATCEHAGHVHSNRRSRAIN 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2388 1308 CDD STKc_IRAK 981 1284 - -
Sto9g2388 1308 SUPERFAMILY Protein kinase-like (PK-like) 952 1281 IPR011009 -
Sto9g2388 1308 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 272 1289 - -
Sto9g2388 1308 Pfam Leucine rich repeat 394 453 IPR001611 GO:0005515
Sto9g2388 1308 Gene3D Ribonuclease Inhibitor 300 452 IPR032675 -
Sto9g2388 1308 Gene3D Ribonuclease Inhibitor 453 535 IPR032675 -
Sto9g2388 1308 Gene3D Ribonuclease Inhibitor 536 604 IPR032675 -
Sto9g2388 1308 Gene3D Ribonuclease Inhibitor 605 908 IPR032675 -
Sto9g2388 1308 SUPERFAMILY RNI-like 537 877 - -
Sto9g2388 1308 Gene3D Transferase(Phosphotransferase) domain 1 1057 1301 - -
Sto9g2388 1308 Gene3D - 3 71 IPR027417 -
Sto9g2388 1308 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 272 1289 - -
Sto9g2388 1308 ProSiteProfiles Protein kinase domain profile. 975 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g2388 1308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1105 1117 IPR008271 GO:0004672|GO:0006468
Sto9g2388 1308 Pfam Leucine rich repeat N-terminal domain 302 341 IPR013210 -
Sto9g2388 1308 Gene3D Phosphorylase Kinase; domain 1 939 1056 - -
Sto9g2388 1308 SUPERFAMILY L domain-like 301 598 - -
Sto9g2388 1308 Pfam Protein tyrosine and serine/threonine kinase 979 1281 IPR001245 GO:0004672|GO:0006468
Sto9g2388 1308 SMART serkin_6 975 1285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto9g2388 1308 ProSitePatterns Protein kinases ATP-binding region signature. 981 1004 IPR017441 GO:0005524
Sto9g2388 1308 SMART LRR_typ_2 440 464 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 833 857 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 664 687 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 688 712 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 488 511 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 785 809 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 368 391 IPR003591 -
Sto9g2388 1308 SMART LRR_typ_2 736 760 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2388 Sto-Chr9 27056273 27066401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2388 301 1285 Receptor kinase-like Gene Family AT3G47570 46.192 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Sto9g2388 PK_Tyr_Ser-Thr 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2388 - - qsu:112031580 1124.77