Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2373 ATGACTAGGAAGAAGGTGAAGCTGGCATTCATAGCGAACGATTCGGCCAGGAAGGCGAcgtacaagaaaagaaagaagggtCTGATAAAGAAGGTGGACGAGCTGACGACTCTGTGTGGGATCGAGGCTTGCGCGATTGTGTACAGTCCGTACGATCCTCAGCCGGAGATATGGCCGTCGGCGATGGGGGTGCAGCGCGTGCTGTCGAAGTTCCGGAGGATGCCGGAGTTGGAGCAGAGCAAGAAGATGGTGAACCAGGAGGGGTTTCTGAAGCAGAGGATCGTGAAGGCGAAGGAGCAAGTGAAGAAGCAGAGGAAGGAGAATAGGGAGAAGGAGATGACGCAGATCATGTATCAGTATCTGAGCGCGGGGAAGATTCTGCATAATATGACGATGGCCGATTTGAACGATCTGGCGTGGCTGATTGAGCAGAATTTGAAGGAGATTGGGAGGAGGGTGGAGGTGTTGGAGAAGAGAGGGCAGAGTCTCGGGCAGGGGCAGGGacaggcggcggcggcggcggttgaTGTGGCGGCCAGGAATAGGGATAAGGCGAAGGTGGAGGAGGTGGAGGTGAATGGGGATGTCATGAATATGATGATGCCTCCTAAGCAGCAGTGGTTTATGGATTTGATGAATGGTGGTGGAGCAGGGGATGAAACGCTGCCGTTTGGAGATGTCAATCATCCTAATCCCTTTTGGCATAATCATGCCTCCACCACCatatcttcttccttcttctcgcAAAGCTTCCCAAGAATGGAAACTCCAAACTCAGAAGCCAACCCTGAAACCCTCAAGATCTTCTTCACCACAAGAGGCATAGTCACAGCATTGGCCTTAGCCATTTCCTTCCCTTCTTCACTATCACACATACAATCCAGCACACCCAACGCCTTCTCACATACCCCTCTTTCTCCATCCACAATAGCTTCTACCAACAACGAAACCAAACCCAATTCCACACATCTTTTTATTACCATCTCTTTTGCTGGAGATGATGAAGCCAAGAGGAAAATCGTTTTCAAGCATGCTTTTGTCGTACAACCTCCTATTGGTTCTTTAATCGTCTTAACCAAAGCCTCTATTAAGCcttcagctttcgccaatgccTCAAACGGCAATTCCTTCATCACTAACGCTGCGTTTTGCCTTGATGTGAGATCCTTGCCGTTTAGGAACCAAAGTATGCTACGTAAAGACGCTTCTGACCCCAGCATTAATCGAGACTCTTCTCTGATTGGAAACATCCATGTTAAAACCCCCAATATCTCCTCCAAAACGCCGACGTTTTTCTCAATGGAATCATTAGAGAAAGAATGA 1323 0.4558 MTRKKVKLAFIANDSARKATYKKRKKGLIKKVDELTTLCGIEACAIVYSPYDPQPEIWPSAMGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRIVKAKEQVKKQRKENREKEMTQIMYQYLSAGKILHNMTMADLNDLAWLIEQNLKEIGRRVEVLEKRGQSLGQGQGQAAAAAVDVAARNRDKAKVEEVEVNGDVMNMMMPPKQQWFMDLMNGGGAGDETLPFGDVNHPNPFWHNHASTTISSSFFSQSFPRMETPNSEANPETLKIFFTTRGIVTALALAISFPSSLSHIQSSTPNAFSHTPLSPSTIASTNNETKPNSTHLFITISFAGDDEAKRKIVFKHAFVVQPPIGSLIVLTKASIKPSAFANASNGNSFITNAAFCLDVRSLPFRNQSMLRKDASDPSINRDSSLIGNIHVKTPNISSKTPTFFSMESLEKE 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2373 440 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 221 - -
Sto9g2373 440 MobiDBLite consensus disorder prediction 296 316 - -
Sto9g2373 440 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sto9g2373 440 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Sto9g2373 440 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Sto9g2373 440 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto9g2373 440 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto9g2373 440 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto9g2373 440 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Sto9g2373 440 Coils Coil 94 114 - -
Sto9g2373 440 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto9g2373 440 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Sto9g2373 440 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2373 Sto-Chr9 26916522 26919598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2373 1 174 Type I MADS-box Gene Family AT5G48670 60.345 3.26e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto9g2373 SRF-TF 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2373 - - gmx:100813231 327.02