Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2356 ATGGCTATTCAAGACCAAAGTGAGATTTCTGGATCACATAATGGTCTTCCAATTGACAATGGAGTATCTTTGAGTTCTAGACTTCATTCTGCTGCACGTGTTCAACTAAATGATCAGTTTTCCTGTGTGAAGGACTATGCTCCCAAGGTGAGAAAACCATACACTATCACGAAACAGAGAGAGCGATGGACAGATGAAGAGCATAAGAAGTTCCTAGAAGCTCTGAAGCTGTATGGCAGGGCATGGCGACGGATTGAAGAACATGTTGGCTCAAAGACCGCAGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCAAAGGTTCTTCGTGACTCTCCTGGGAGCAAAAGCACAAGCTCCATGGAATCCATTGAAATTCCACCTCCAAGACCAAAACGAAAGCCCGTGCATCCTTACCCTCGAAAGCTGGTAGAGATCCCTGCTAAAGAATTTTCCAACACAGAGCAGGAAATGAGGTCTATTTCTCTGAAGTCATCCGAGTTTGATCAAGAAAACCAATCTCCCAAATCAGTGTTATCTGCAATTGGTTCAGAAACCATGGTGTCCTCTGATTCTGATACACCAAATGGGAGTTTATCTGAGGAAGATCAGCCAAATGCTGATTCATCTCTTGATGAACAACCTCTTGTGaaattggagctttttCCCAAAGAGAGCGTGTCTACCACAGCAGAAGAATCATCCGGTCAGATTCTTAAGCTTTTTGGGACGACTCTTGTGGTAACAGTTGCTTCTAGACCATCTCCAACAACGGAGAATTCAGATATTGCAGAAGCTCCTGCTGCTTTTGCTCCTTTGTGGACTCTTTCCCAAGATGAAGCTGAAAAGGAAGGATGTTGGAGAGGTTCAAACATCACTAGCTCAATAAAGGATGATGAAAAATTAGATGTTAAAGCCAAAACGACACTTCCACCCAGTGAAACATCAGCCATATGTGAAAGAAAGGAGAGGCTTAAAGGGTTTGTGCCATATAAAAGATGCATTGCAGAGAGAGAAAACCAGTGCTCACCGGTTACAATGGAGGAGAGGAATGGACAACGCATTCGCCTTTCGTTGTAG 1080 0.4296 MAIQDQSEISGSHNGLPIDNGVSLSSRLHSAARVQLNDQFSCVKDYAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGSKTAVQIRSHAQKFFSKVLRDSPGSKSTSSMESIEIPPPRPKRKPVHPYPRKLVEIPAKEFSNTEQEMRSISLKSSEFDQENQSPKSVLSAIGSETMVSSDSDTPNGSLSEEDQPNADSSLDEQPLVKLELFPKESVSTTAEESSGQILKLFGTTLVVTVASRPSPTTENSDIAEAPAAFAPLWTLSQDEAEKEGCWRGSNITSSIKDDEKLDVKAKTTLPPSETSAICERKERLKGFVPYKRCIAERENQCSPVTMEERNGQRIRLSL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2356 359 Gene3D - 62 108 - -
Sto9g2356 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Sto9g2356 359 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Sto9g2356 359 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Sto9g2356 359 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Sto9g2356 359 SMART sant 59 107 IPR001005 -
Sto9g2356 359 PANTHER PROTEIN REVEILLE 7-RELATED 263 346 - -
Sto9g2356 359 PANTHER PROTEIN REVEILLE 7-RELATED 35 259 - -
Sto9g2356 359 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Sto9g2356 359 CDD SANT 62 105 IPR001005 -
Sto9g2356 359 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Sto9g2356 359 MobiDBLite consensus disorder prediction 127 144 - -
Sto9g2356 359 PANTHER SWI/SNF COMPLEX-RELATED 263 346 - -
Sto9g2356 359 PANTHER SWI/SNF COMPLEX-RELATED 35 259 - -
Sto9g2356 359 MobiDBLite consensus disorder prediction 108 212 - -
Sto9g2356 359 MobiDBLite consensus disorder prediction 153 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2356 Sto-Chr9 26790627 26792886 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto9g2356 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2356 - - gmx:778060 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2356 9 26790627 26792886 Sto9g2356 9 26790627 26792886 ECH