Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2354 ATGTCAAACGATGAACAATCCTTCGCACCACTTCCATTTGATAGAGCTGTTGAGCAGGCAATTGTGTCTATAAAGAAAGGTGCATACTTACTCAAGTCTGGACGCAGAGGAAAGCCCGAGCTCTGTCCTTTTAGGCTTTCACCGCAGGAAAAGCATTTGCAATTGAGTGCAGTTACAAAAATTGTTCAACAGCAAGGAAATGCGAGGTCCCGGAGGCAAAGCCACACTGAAATGGATTGCCATTCATTTTCACTAATCTACGCTAACGGTGAACGCTCACTTGATCTGATATGCAAAGACAGAGCACAAGCTGCTTCTTGGTTAGTTGGCTTGAGAGCTGTGATATCTAGGTCCCAGAATCCAAAATCTTTAAGTAATTTAAGAAGTTGCAAAGGGGTGCAGAGTTGTGTCAGTAGTCCAGCTGGAATATTCCGGAGAAAGAAAAATCTTGGTCTTCTGGAGGATACTTCTGAATTCACCCAGGTACACAGCTTATGTGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGAGGGCTTATCATATGCTTCCAATAGCTTTTATTCATCCGAGCCTTTCCTATACAATACTCCGAGGGTAACAGACATTTCAGTCCCAAGTTCTCCATATATTAATCCAGATTTTCTAATTAAGAGTGGATCACCATATGCCAACACAGAGTCCGAGGAGAATTCGCCCTATAAGTGTCTGCCTCCTACTTCCCCACACTTAGGAAACAAAAATGTATTGAAGGATGTCATGGTCTGGGGTGCAGGGATTGGAGGGAGTGGTAATAACAGGTTTGGAAACCAACACAACGTTCATACTTTGCCAAAGTTACTGGAATCCACCATGACGTTAGATGTACAAAATATAGCATTAGGAGGAAAACATGCTGCCTTGGTCACAGAACAAGGGGAAGTGTTCTGTTGGGGTCAAGGGAAAGGGGGAAGACTAGGGCACAAAATTGATATTGATGTGAGCTCTCCGAAAATAGTTGATTCTCTTAGTGGCATCCATATAAAATATGCTGTCTGTGGTGAGTATCATACATGTGCTTTGACAGATACTGGTGTAGTATATACGTGGGGGAACGATAGTGGTTGTACAGATTCTGGTGGTTATGGGAGAAATAGAAGTCGGTGGATACCACATAAACTTTCAGGAGCTTTGGATGGTATTCGTATTTCAAGTGTTGCTTGTGGGGAATGGCATACAGCAGTAGTCTCTTGCTGTGGAAGACTATTCACATATGGAGATGGCACTTTTGGAGTTCTTGGGCATGGGAATCTTCAGAGCATTTCTCAACCGAAAGAAGTTGAGTCTCTTAGAAGTCTACGGGTGAGGTCTGTTGCCTGTGGATCATGGCACACAGCAGCTATTGTAGAAGTTGCGGTTGCCCGTTTTAAGTATAATACTTCTTCTGGTAAGCTATTTACTTGGGGTGATGGAGATGAAGGGAGGCTTGGCCATGCTGATAATGAAAGGAGGCTCTTACCGACATGTGTTGCACAGCTTGTAGATTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAATTTGGGCAAAGTTTTCACCATGGGAAGTATGGTGCATGGACAACTAGGAAATTCACACACCAAGGATAATGTAGTGACACTTGTCGAAGGACAGCTGAAACAGGAGTTTGTTAAGGAGATATCATCCGGTTTGTATCACGTGGCTGTGCTGACAGCTGCCGGGAGTGTCTATACATGGGGAAAGGGTACAAATGGGCAGCTAGGTTTAGGTGATACCGAAGATAGACACTCACCTTCTTTTGTTAAGGCTCTAAAAGATAGGCATATAGAAAGTATTGCTTGTGGATCATGCTTCACAGCTGCAATCTGTTTACACAAACCTGTTTCTATTGCTGATCAATCAGCTTGTAGCAGTTGCAAGCTGCCATTTGGGTTCAGAAGGAAGAAACATAACTGTTATAATTGCGGTCTTGTCTTCTGCCATCCCTGTAGTACTAACAAGGTAACAAATGCATCTCTAGCACCGAATAGGCGGAAATCTTTTCGGGTTTGTGATTCGTGCTTTAACAAATGTCAAGGAATCACACATTCACCAATGTCATCCAAGTCGAGAAATTACAACACTCGGGACCTACTGAAGCATCAGAGTAAATTTTCTCATCTGATAGAAGATAGAGGAGAAACGACGGTGACACCAAGTCCTCTGTTGTCCCTAGGTCAATCGTGTTACATGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAATTCAACAAGAAAGCCAGAAGAATTTAGAAAATATTTCTTCGGTCTTGGGTGGAGTATCACAATGGGGCCAAGTTTCATGCCCTGCTCTATTTAAAACAAATTGTACAGAAAATACTTTTGTGCATGTttcttcattaaaaaataaattaccttCTGCTAATCTTCTGGATTTAGAAGCCAGAGTATCCAGCACCCCCAGTGCAGAGAAAGATATACCGACATCTGATAAATTGCTCGTAGAAGAAGTTCGGAGGCTGAGAGCTGAGGCTAGGAAGCTTGAAGAGCAGTCCAAGCTGAAAAATCATATATTACAAGAATGCCATCAAAAAATCGAGGAGAGTATGTCGTTGGCGAGGGAAGAAGCTGCTAAGTGTAAGGCAGCAAAAGAGGTCATAAAAGCTCTGGCATTAAAACTTCATACAATATCAGGAAAAGCCAATTCTGGACAAGAAGAAAAGATCGTCGGTGCACATGAAAGTCTGCCTTATCTGCCGTCCATACATACCGATATCCATACTCCAAAGAATTGCAACCTGGACAGTCTATCTAGTTCCCCTATAGTATTCTCTGACAAATTGAAATCCAAATTTGGGAGAAGCATGTTCCTCCAAAGTGATAATAAAGCAATGGAGGATTCTCATCATCAAGAAGACAGCACAAAAGGGTCAAAGGTTGAATGGGTAGAACAGTTTGATCCTGGTGTGTACATCACACTCACAACCTTGCCTTGTGGTCAAAAGGGCCTCAAGAGAGTGAGATTCAGCCGGAAACGATTCTCTGAAAAAGAAGCAGAGAGATGGTGGGAAGAGAATCAAGAAAGAGTGTGCCATAAGTATGGGATTGGAGGGTTCCACCCTACAGATGAAGAACTGGTAGCTTATTATCTCAAAAGAAAGATCAATGGGCGTAAGATTGAGTTAGAGATCATCCCTGAAGTTGATCTTTACAAGTGCGAACCATGGGACTTGCCAGGAAAATCATTGTTGCCGGGAAAAGATTTGGAGTGGTACTTCTTCAGTCCTCGAGATAGAAAGTACCCAAATGGGTCAAGAACGAATAGAGCCACAAAATGTGGATATTGGAAGGCCACAGGAAAAGACAGGAAAGTGAATTCACAGAGTAGAGCAGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGTCGAGCCCCCCATGGTTGTCGCACCAATTGGGTCATGCATGAATATCGTCTCGATGAGAGAGAATGCGAAACTCCTTCTGGCCTTCAGGATGCATATGCTCTTTGTCGTGTGTTCAAGAAGACAGCAGTGATTCCTACAAAAATAGGAGAGCATGCGCAGTATgTGGATATAGCACTGGAGTGTGCAAGGATGCAGCATAGGTTGGCTATGCCTTCATTGGAGGTGGAGGAGTTTGGTCAAGTGGGGAACAATTGTCAAGTGACGAAGATGCATTattcaaataataatgaaaGCACAGACATGTTATTACAGGAGATTCTTTCTGTTGCTCATGCTTCTCAGCAACTCATAAACCACTCTGATTCTGACTATTCACACTCATGGGGTGCTCCTAATCATCAACACtatgcttctgcttctgcttctgcacaACAAGATGATCATGACTTCACCTTCATGGTTCATGCCACACACACTACTACTACTAGTGATCATGATGATTATTACAACCATGCCACCTGGGAAGATCCGAATTCAATCAGATCCATACAGATTGGGGATCTGGAtgatgatgatttcaaatcagATCATAGAatggttgagaatttaagatgGAGCTTCATGGAAGATCAGAAGATTGTTCCAATTGAGGATATTTCAAGTTTTCATACTAACAGGGAAGGCAAGAACCTAAtgcaagCAGAATGTGATAGCAGCAAGGAGCTGAATGACGCTGAAATAAACGACATGTCGTTGGGGTTTATGAACGAGGATCATGACCCCAACAACAACAAGAATGATGGAGAGGACTATTCAAGCTGTCCAAGCTTCGAAGTGGTGGAGGAAGTGAAAGTGAGCCATGGAATGTTAATGTCAACACGACAAGTCGCTGACACATTGTTTCACCAAATAGTGCCTTCACAAACCCTCAAAGTCCACCTCAATCCACACTACCACTCCTCTCACTCTATAGGCCACAATATTATTAACGCTGACGATGACGACTTCACAGTTTCTTTCTTTAGAGACTTGAAGGCCCACGTGAAGGCTATAGCAACttccatccttttcttcttatttGCACTTCTCATGATGCATTGTCTTTATTATCGATCTTCTGATCAGGATGTCAAGAGAATCAGAGAATCTGGAGGTATAGagtggaataataataataataatattgagaatgagaatgagaaggaAAAGGTTTGGCTTGTGGGGATCAAAAGTGGGAAAGGATTGTGTGTGGTGTTGAAGAAGATTGGAATTTTTCTTACTGTTTCTTTTGCTCTTTGTACCATGTGGGCTAACCACATTATACTTCATTAa 4785 0.4123 MSNDEQSFAPLPFDRAVEQAIVSIKKGAYLLKSGRRGKPELCPFRLSPQEKHLQLSAVTKIVQQQGNARSRRQSHTEMDCHSFSLIYANGERSLDLICKDRAQAASWLVGLRAVISRSQNPKSLSNLRSCKGVQSCVSSPAGIFRRKKNLGLLEDTSEFTQVHSLCASPTLSLSERCFSEGLSYASNSFYSSEPFLYNTPRVTDISVPSSPYINPDFLIKSGSPYANTESEENSPYKCLPPTSPHLGNKNVLKDVMVWGAGIGGSGNNRFGNQHNVHTLPKLLESTMTLDVQNIALGGKHAALVTEQGEVFCWGQGKGGRLGHKIDIDVSSPKIVDSLSGIHIKYAVCGEYHTCALTDTGVVYTWGNDSGCTDSGGYGRNRSRWIPHKLSGALDGIRISSVACGEWHTAVVSCCGRLFTYGDGTFGVLGHGNLQSISQPKEVESLRSLRVRSVACGSWHTAAIVEVAVARFKYNTSSGKLFTWGDGDEGRLGHADNERRLLPTCVAQLVDYDFVQVSCGRMLTVALTNLGKVFTMGSMVHGQLGNSHTKDNVVTLVEGQLKQEFVKEISSGLYHVAVLTAAGSVYTWGKGTNGQLGLGDTEDRHSPSFVKALKDRHIESIACGSCFTAAICLHKPVSIADQSACSSCKLPFGFRRKKHNCYNCGLVFCHPCSTNKVTNASLAPNRRKSFRVCDSCFNKCQGITHSPMSSKSRNYNTRDLLKHQSKFSHLIEDRGETTVTPSPLLSLGQSCYMKSMPSGRKDWKIQQESQKNLENISSVLGGVSQWGQVSCPALFKTNCTENTFVHVSSLKNKLPSANLLDLEARVSSTPSAEKDIPTSDKLLVEEVRRLRAEARKLEEQSKLKNHILQECHQKIEESMSLAREEAAKCKAAKEVIKALALKLHTISGKANSGQEEKIVGAHESLPYLPSIHTDIHTPKNCNLDSLSSSPIVFSDKLKSKFGRSMFLQSDNKAMEDSHHQEDSTKGSKVEWVEQFDPGVYITLTTLPCGQKGLKRVRFSRKRFSEKEAERWWEENQERVCHKYGIGGFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVNSQSRAVGMKKTLVYYRGRAPHGCRTNWVMHEYRLDERECETPSGLQDAYALCRVFKKTAVIPTKIGEHAQYVDIALECARMQHRLAMPSLEVEEFGQVGNNCQVTKMHYSNNNESTDMLLQEILSVAHASQQLINHSDSDYSHSWGAPNHQHYASASASAQQDDHDFTFMVHATHTTTTSDHDDYYNHATWEDPNSIRSIQIGDLDDDDFKSDHRMVENLRWSFMEDQKIVPIEDISSFHTNREGKNLMQAECDSSKELNDAEINDMSLGFMNEDHDPNNNKNDGEDYSSCPSFEVVEEVKVSHGMLMSTRQVADTLFHQIVPSQTLKVHLNPHYHSSHSIGHNIINADDDDFTVSFFRDLKAHVKAIATSILFFLFALLMMHCLYYRSSDQDVKRIRESGGIEWNNNNNNIENENEKEKVWLVGIKSGKGLCVVLKKIGIFLTVSFALCTMWANHIILH 1594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Sto9g2354 1594 ProSiteProfiles NAC domain profile. 1041 1191 IPR003441 GO:0003677|GO:0006355
Sto9g2354 1594 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Sto9g2354 1594 SUPERFAMILY RCC1/BLIP-II 254 634 IPR009091 -
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 415 466 IPR000408 -
Sto9g2354 1594 Gene3D - 226 372 IPR009091 -
Sto9g2354 1594 Gene3D - 373 467 IPR009091 -
Sto9g2354 1594 Gene3D - 468 638 IPR009091 -
Sto9g2354 1594 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 18 1045 - -
Sto9g2354 1594 SUPERFAMILY NAC domain 1046 1191 IPR036093 GO:0003677|GO:0006355
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 308 359 IPR000408 -
Sto9g2354 1594 Gene3D NAC domain 1050 1194 IPR036093 GO:0003677|GO:0006355
Sto9g2354 1594 SUPERFAMILY FYVE/PHD zinc finger 639 713 IPR011011 -
Sto9g2354 1594 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 453 463 IPR000408 -
Sto9g2354 1594 Gene3D - 16 123 IPR011993 -
Sto9g2354 1594 PRINTS Chromosome condensation regulator RCC1 signature 291 304 IPR000408 -
Sto9g2354 1594 PRINTS Chromosome condensation regulator RCC1 signature 310 326 IPR000408 -
Sto9g2354 1594 PRINTS Chromosome condensation regulator RCC1 signature 401 417 IPR000408 -
Sto9g2354 1594 PRINTS Chromosome condensation regulator RCC1 signature 417 431 IPR000408 -
Sto9g2354 1594 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Sto9g2354 1594 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Sto9g2354 1594 ProSiteProfiles BRX domain profile. 988 1043 IPR013591 -
Sto9g2354 1594 SUPERFAMILY PH domain-like 16 115 - -
Sto9g2354 1594 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 401 411 IPR000408 -
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 253 307 IPR000408 -
Sto9g2354 1594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 710 IPR013083 -
Sto9g2354 1594 PANTHER F12P19.9 PROTEIN 18 1045 - -
Sto9g2354 1594 Coils Coil 839 859 - -
Sto9g2354 1594 Pfam Regulator of chromosome condensation (RCC1) repeat 582 630 IPR000408 -
Sto9g2354 1594 Pfam Regulator of chromosome condensation (RCC1) repeat 308 356 IPR000408 -
Sto9g2354 1594 Pfam Regulator of chromosome condensation (RCC1) repeat 415 463 IPR000408 -
Sto9g2354 1594 Pfam Regulator of chromosome condensation (RCC1) repeat 360 411 IPR000408 -
Sto9g2354 1594 Pfam Regulator of chromosome condensation (RCC1) repeat 477 526 IPR000408 -
Sto9g2354 1594 Pfam Transcription factor regulating root and shoot growth via Pin3 988 1042 IPR013591 -
Sto9g2354 1594 Pfam No apical meristem (NAM) protein 1047 1168 IPR003441 GO:0003677|GO:0006355
Sto9g2354 1594 SMART fyve_4 632 701 IPR000306 GO:0046872
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Sto9g2354 1594 Pfam FYVE zinc finger 640 700 IPR000306 GO:0046872
Sto9g2354 1594 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 360 414 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2354 Sto-Chr9 26763190 26775102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2354 1047 1467 NAC Transcription Factor Family AT5G17260 43.013 5.02e-95 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto9g2354 NAM 3.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2354 - - gmx:100797223 1441.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2354 9 26763190 26775102 Sto9g2354 9 26763190 26775102 ECH