Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2340 ATGAAGCTGTGGCATGCATGCGCGGGTCCCCTCGTGTCCCTACCTACTGCTGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCAGCCACAACTAACAGAGAAGTTGATGGCCACATACCCAATTACCCAAGCTTGCCACCCCAGTTGATTTGCCAGCTTCATAATGTCACAATGCATGCTGATGTGGAAACAGATGAAGTTTATGCTCAAATGACTCTTCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTTTGGAATTGGGGGTTCCAAGTAAGCAGCCCACAAATTATTTTTGCAAGACGTTAACAGCAAGTGACACCAGCACTCATGGAGGGTTTTCTGTTCCTCGTCGCGCAGCTGAGAAAGTTTTCCCTCCACTGgatttctcacaGCAACCACCTGCACAAGAACTAATTGCTAGGGACCTTCATGATGTTGAGTGGAAGTTTAGACATATTTTTCGGGGGCAACCTAAACGGCACCTTCTTACAACAGGCTGGAGTGTGTTTGTTAGTGCTAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTCATATgGAATGAAAAGAATCAGCTTCTTTTAGGAATACGCCGTGCCAATAGGCCACAAACTGTGATGCCATCGTCAGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCCACTAATAGCTGTTTTACGGTGTTCTATAATCCAAGACACGTCATGGGCAGGGCTAGTCCGTCAGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTGTACCATACACGAGTTTCAGTTGGCATGCGTTTCCGGATGCTTTTTGAGACTGAGGAGTCAAGTGTACGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGTTGGccaaactctcattggcgatcTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGATAGACAGCCACGTGTATCATTGTGGGAAATTGAGCCTTTGACAACATTCCCAATGTATCCATCATTGTTCCCCCTCAGATTGAAACGTCCATGGCATCCTGGCCCCTCGTCTTTGCATGCACCAAGGCACTTCACTGGAAACACTGCAGGACTTATCTCTTATTTTGTTCTGCTTGCCTTTACCTATTATCGTGTTACAGATGGAAGAGATGAAGCGGGACTAATGTGGCTGAGAGGTGGACCTGGAGATCAAGGTCTCAACTCCCTAAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGAATGGATCCAACTTTACTGGGTAATGACCATAATCAACAATATCAGGCCATGTTGGCGGCTGGTATGCAGAACATAGGGAGTAGCGATCTCTTACGTCAACAAATGATGCATATGCAACAACCATTCCAATATCTTCAACAATCTGGAAACAATAGCTCCATGCAACTTCAACAGCAGCAGCAAGCAATTCAGCAATCACTGTGTTCTAATATCCTGCAGCCACAAGCCCCAATGTTGACTGAGAATCTGTCTCAGCACCTCCTTCAGAAACCGCATAACAATCAAGAAGACCAAACACAGCAGCCGCAGAATATGTATCATGATACATTTTTGATTCAGGGTGATCAGATTCAGCAGAGGCAACAACATTCCAATGTGCCTTCACCATCATATTCGAAACCTGATTTCTTAGAGTCAAGCATGAAGTTCTCATCGGTTTCCCCTGGACAGAATATGCTTAGTTCACTTTGTCCTGAAGGGAGTAGCAATCTTTTGAACTTGTCCAGAACCAGTCAGTCCATGCTGACTGAACAATTACCTCAACAATCATGGGCTCCAAAGTATGCAACTTCGCAGGTTAGTACTGCATTTGGCAACTCATTGTCCCACATACAATATACTGGGAAAGATTCTGCTATGGTGCCACCACATTGTAGTTCAGATGCCCAAAATCCTACTCTCTTTGGTGTTAATATTGATCCATCTGGACTTTTGCTCCCTTCCACTGTCCCTGGTTATACTTCATCAATTGGCACTGATGCATCAACGATGCCACTAGGGGAGTCCGGATTCCAGGGTTCTTTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTTCAGGGCAAGTTGACCCACAAAACCAGACTCCGACATTTGTCAAGGTTTACAAATCAGGTTCGGTTGGGCGTTCCCTTGACATCTCCCGGTTCAGCAGCTATCATGAGCTGAGAGAGGAGTTGGCCCAGATGTTTGGGATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTTCTTCTCCTTGGAGACGATCCTTGGGAATCATTTGTCAATAATGTTTGGTATATCAAGATACTTTCACCTGAAGATATTCAGAAAATGGGCGAGCAAGCGGTGGAATCGCTCGGTCCAAACGCAGGACAAAGGGTGAATAGCAGCAGTGCAGAATCTCAGGACCTTGTTTCTGGGTTCCCATCACTTGAATACTGA 2547 0.4515 MKLWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPLELGVPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRHVMGRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGPSSLHAPRHFTGNTAGLISYFVLLAFTYYRVTDGRDEAGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRMDPTLLGNDHNQQYQAMLAAGMQNIGSSDLLRQQMMHMQQPFQYLQQSGNNSSMQLQQQQQAIQQSLCSNILQPQAPMLTENLSQHLLQKPHNNQEDQTQQPQNMYHDTFLIQGDQIQQRQQHSNVPSPSYSKPDFLESSMKFSSVSPGQNMLSSLCPEGSSNLLNLSRTSQSMLTEQLPQQSWAPKYATSQVSTAFGNSLSHIQYTGKDSAMVPPHCSSDAQNPTLFGVNIDPSGLLLPSTVPGYTSSIGTDASTMPLGESGFQGSLYACMQDSSELLQSSGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPNAGQRVNSSSAESQDLVSGFPSLEY 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2340 848 CDD B3_DNA 105 206 IPR003340 GO:0003677
Sto9g2340 848 SUPERFAMILY CAD & PB1 domains 719 799 - -
Sto9g2340 848 Gene3D - 275 347 - -
Sto9g2340 848 Gene3D - 721 814 - -
Sto9g2340 848 Pfam Auxin response factor 232 320 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto9g2340 848 ProSiteProfiles PB1 domain profile. 725 809 IPR000270 GO:0005515
Sto9g2340 848 MobiDBLite consensus disorder prediction 821 848 - -
Sto9g2340 848 Gene3D - 104 207 IPR015300 -
Sto9g2340 848 SUPERFAMILY DNA-binding pseudobarrel domain 90 235 IPR015300 -
Sto9g2340 848 SMART B3_2 106 208 IPR003340 GO:0003677
Sto9g2340 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 402 834 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto9g2340 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 374 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto9g2340 848 MobiDBLite consensus disorder prediction 549 577 - -
Sto9g2340 848 Pfam AUX/IAA family 719 809 IPR033389 -
Sto9g2340 848 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Sto9g2340 848 MobiDBLite consensus disorder prediction 823 840 - -
Sto9g2340 848 PANTHER AUXIN RESPONSE FACTOR 2 374 - -
Sto9g2340 848 PANTHER AUXIN RESPONSE FACTOR 402 834 - -
Sto9g2340 848 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2340 Sto-Chr9 26633758 26640550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2340 76 822 B3 DNA Binding Superfamily AT5G37020 65.966 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto9g2340 AUX_IAA 4.8e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2340 - - gmx:100784804 1401.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2340 9 26633758 26640550 Sto9g2340 9 26633758 26640550 ECH