Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2325 ATGGGCAAACAGGTAATGGCTTTGAAACAGCGGGGTATCAGGGCCGAGTATCTTGGAAGTGCTCAGACAGATCCCACCATCCAGACTAGAGCTGAGAGTGGGCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCGTGCTTAATTCCCACTAGTTTCTGGTTGAACTTGCAAAAGGCAGGAATTTGTCTTTTTGCTGTTGACGAGGCACATTGTATATCAGAGTGGGGCCATGATTTTAGGGTGGAGTACAAGCAGTTGGACAAGTTACGAGGTGTTCTATCAGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATCATCAGTTCCTTGAAGATGCATAATCCTTATGTTTCAATTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCCTTACAATCATGGACAACATTTTGTAAATGAGCTCATCCAAGATATTTCAGAAAATGTAGCTAGTGGTGGTTCAAGTATAATCTACTGCACAACAATCAAAGATGTAGAGCAGATTTCCAAGTCATTTTTGGAAGCAGGTGTTGCAGCTGGGATGTACCATGGGCAGATGACTAAGAAAGCTCGCGAGGAATCTCAtagATTATTTGTTAGAGATGAACTGCAAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAACCTGACATAAGACAGGTGATACACTATGGCTGCCCTAAGAGCCTGGAATCATACTACCAGGAAAGTGGGCGTTGCGGTCGAGATGGTATAGCTTCTGTCTGTCGACTTTACTACACAAGAAGTGACTTTGCTAAGGGAAACTTTTATTGTGGAGAATTACAAACAGAAAAGCAAAGAAGAGCTGTCATGGAGTCATTAATAGCTGCTGAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTCTTGCTCGAATACTTTGGGGAAAAAGTTTCAGCTGATAGATGTGGAAATTGTGATAACTGCACTGTCTCAAAGAAGGAGCGTAACATGTCAAGAGAAGCCTTTCTTCTACTGGCTTGCATTCATACATGTAAGGGTAAATGGGGCCTCAACATGCCCATTGACATCCTACGAGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCACTTCATGGTCTTGGGAAATCTTACCCATCAAATTGGTGGAAAGCACTAGGGCATCAACTGATTTCTTATGGTTATTTGAAGGAGATTGTTAATGATGTGTACAGAACAGTGAGTGTCAGCTCAAAAGGAGAGCAATTTTTGGCTTCTTCTACACCGGATTATCAGCCGCCCTTGGTTTTGTCAGTGACTACTGAAATGGATGATGAAGAGGAAAATAGAGGTGCACCAGAAGAATTCAAAACCTTAGCCACTTCAGAAACTGAGGGTTTTTCGGAGGCTGAGAGTCAACTCTACCAAATGCTTTTGGAAGAGAGATTGAAACTTGCAAGAAGCATTGGAACAGCTCCATATGCCATATGTGGTGATCAAACGATCAAGAAAATTGCATTGACAAGACCATCTTCAAGAGCACGGCTAGCAAACATTGATGGTGTGAATCAGCACCTTGTAACGAAATATGGAGATCGTTTTCTTGAAGTTATTCAACAATTGTCACAAGGTTTGAACCTTTCTTTGGATGGAGAACCAAGCTCACAAATTGCTACAGTAAGGAAAGTGACCCCTCTAAGTACATCCAATGGATCAAAGAAGTTGACACCAGCAAAGTTTGAGGCCTGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACCTTCCAGGTAGATCAGCTCCTATAAAGGAGCAGACTGTTGCCGACTATCTGCTGGAAGCTTCTCGAGAAGGATTGCCTTTTGATTGGAGTAGATTCTGTGATATGGTTGGACTGACACCTGAGATCATCTCACAAATTCAGGCCGCTATCGTAAAGGTTGGATCTAAAGAAAAATTGAAGCCTATAAAAATGGAATTACCAGAGGATGTAAGCTATCTGCACATCAAGACTTATTTGGCTATGCCAAACTCTGAAATATCTCCTGAAAGCATTCAGCCTCAAAGCTGCCAGGCAGGGAAAGATGGCGAGCTCGGAAATAATGAATCAGATTTATCACAGCATCCACTTGATACATGCCACATGGAAGTTGACATGTCTGCTGAGACTTTGATTAAAAATTGTGACCTAGAAAAGGATAAGGAGTCGCCTGGACCTACCAACAGTGGCTTTGTACAGAAACTTCCATTGGTCTCTGAGGAGGAATTCACAAAGAAGCGTCTAAAAGTCTGTGAACCAGAGGAAGAAAATCCTATCAAATTGAAGGCAACAGAGAGTTCCTTAGTAGAGTGGATGAAGAACCATGGAGGGGCTACACTGATTGATATTCTGAAGCACTTCAATGGATCCAGTGAAGATTCTGTGGTTGAACTACTCAATTGCCTCGAGAGTGAGTTtgtgatatataaaaaaaataacatgtacAGGCTTATGTAA 2529 0.4172 MGKQVMALKQRGIRAEYLGSAQTDPTIQTRAESGQFDILFMTPEKACLIPTSFWLNLQKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLKMHNPYVSIGSFDRPNLFYGVKPYNHGQHFVNELIQDISENVASGGSSIIYCTTIKDVEQISKSFLEAGVAAGMYHGQMTKKAREESHRLFVRDELQVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCRLYYTRSDFAKGNFYCGELQTEKQRRAVMESLIAAERYCLLTTCRRKFLLEYFGEKVSADRCGNCDNCTVSKKERNMSREAFLLLACIHTCKGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKSYPSNWWKALGHQLISYGYLKEIVNDVYRTVSVSSKGEQFLASSTPDYQPPLVLSVTTEMDDEEENRGAPEEFKTLATSETEGFSEAESQLYQMLLEERLKLARSIGTAPYAICGDQTIKKIALTRPSSRARLANIDGVNQHLVTKYGDRFLEVIQQLSQGLNLSLDGEPSSQIATVRKVTPLSTSNGSKKLTPAKFEAWKMWHEDGLSIQMIANLPGRSAPIKEQTVADYLLEASREGLPFDWSRFCDMVGLTPEIISQIQAAIVKVGSKEKLKPIKMELPEDVSYLHIKTYLAMPNSEISPESIQPQSCQAGKDGELGNNESDLSQHPLDTCHMEVDMSAETLIKNCDLEKDKESPGPTNSGFVQKLPLVSEEEFTKKRLKVCEPEEENPIKLKATESSLVEWMKNHGGATLIDILKHFNGSSEDSVVELLNCLESEFVIYKKNNMYRLM 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2325 842 Gene3D - 132 333 IPR027417 -
Sto9g2325 842 Pfam Helicase conserved C-terminal domain 153 257 IPR001650 -
Sto9g2325 842 Pfam Helix-turn-helix domain 588 684 IPR029491 -
Sto9g2325 842 Pfam RQC domain 336 433 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sto9g2325 842 SMART RQC_2 339 443 IPR018982 GO:0006260|GO:0006281|GO:0043138
Sto9g2325 842 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 1 390 IPR004589 GO:0004386|GO:0006310
Sto9g2325 842 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 152 303 IPR001650 -
Sto9g2325 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 380 IPR027417 -
Sto9g2325 842 Pfam RecQ zinc-binding 271 332 IPR032284 -
Sto9g2325 842 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 676 - -
Sto9g2325 842 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 124 IPR014001 -
Sto9g2325 842 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 1 676 - -
Sto9g2325 842 MobiDBLite consensus disorder prediction 691 713 - -
Sto9g2325 842 Gene3D - 334 457 IPR036388 -
Sto9g2325 842 Gene3D - 1 130 IPR027417 -
Sto9g2325 842 SMART helicmild6 177 258 IPR001650 -
Sto9g2325 842 MobiDBLite consensus disorder prediction 450 472 - -
Sto9g2325 842 CDD SF2_C_RecQ 132 267 - -
Sto9g2325 842 SMART hrdc7 475 555 IPR002121 GO:0003676
Sto9g2325 842 ProSiteProfiles HRDC domain profile. 475 555 IPR002121 GO:0003676
Sto9g2325 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 125 IPR027417 -
Sto9g2325 842 SUPERFAMILY HRDC-like 474 550 IPR010997 GO:0000166|GO:0044237
Sto9g2325 842 Gene3D HRDC domain 473 554 IPR044876 -
Sto9g2325 842 Pfam HRDC domain 479 545 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2325 Sto-Chr9 26553790 26562515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2325 166 274 Eukaryotic Initiation Factors Gene Family AT3G19760 28.440 8.78e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2325 K03654 - gmx:100797777 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2325 9 26553790 26562515 Sto9g2325 9 26553790 26562515 ECH