Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2302 ATGCCTCTCACTCTCCACCCTCCGAATTCTTCAAAATCGCACCAGAAACTTCTCAGAATCATCCTCACGGACCACGACGCCACTGATTCTGACTCTTCCTCTGATGAACAAGAGTATCATCCTCCAAGCGCCTCCTCCCGGAACCACCGCCACAACAAGTTCAGAGGCGTTCGCCAGCGGCCGTGGGGGCGATGGGCCGCGGAGATCCGAGACCCGACCCGGAGGAAACGGGTCTGGCTCGGGACGTTCGACACGGCGGAGGAGGCCGCGTCGGAGTACGACAAGGCCGCGAAGTTTGGAGAAGAAGAGTTCAGCGAGTTTGACATCGACGACTTCTTGACGTGGCCCAACTAA 354 0.5847 MPLTLHPPNSSKSHQKLLRIILTDHDATDSDSSSDEQEYHPPSASSRNHRHNKFRGVRQRPWGRWAAEIRDPTRRKRVWLGTFDTAEEAASEYDKAAKFGEEEFSEFDIDDFLTWPN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2302 117 Pfam AP2 domain 53 101 IPR001471 GO:0003700|GO:0006355
Sto9g2302 117 CDD AP2 53 97 IPR001471 GO:0003700|GO:0006355
Sto9g2302 117 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 98 - -
Sto9g2302 117 SMART rav1_2 53 114 IPR001471 GO:0003700|GO:0006355
Sto9g2302 117 Gene3D AP2/ERF domain 52 109 IPR036955 GO:0003700|GO:0006355
Sto9g2302 117 ProSiteProfiles AP2/ERF domain profile. 53 97 IPR001471 GO:0003700|GO:0006355
Sto9g2302 117 SUPERFAMILY DNA-binding domain 53 100 IPR016177 GO:0003677
Sto9g2302 117 MobiDBLite consensus disorder prediction 22 55 - -
Sto9g2302 117 PIRSF PTI6 6 48 IPR017392 GO:0003700
Sto9g2302 117 PIRSF PTI6 36 100 IPR017392 GO:0003700
Sto9g2302 117 PIRSF PTI6 98 117 IPR017392 GO:0003700
Sto9g2302 117 MobiDBLite consensus disorder prediction 22 36 - -
Sto9g2302 117 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF120-RELATED 15 98 - -
Sto9g2302 117 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Sto9g2302 117 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2302 Sto-Chr9 26385661 26386476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2302 10 97 AP2-EREBP Transcription Factor Family AT4G27950 41.221 7.33e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g2302 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2302 K13434 - gmx:100800489 106.686