Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2301 ATGAAAATGCTAGCATTAGACTGTCTATGGTGGGAATGTGGTTGTTTTTGCTGTTATGCATCAGCATTTGAGGTTGTGTTTTCCTTAAATTCTGAAGTTGAGTGGTCATGTGCTATTAATGTCATTTCTGATTCAATCATGGCAGACAAAGCACATAATGGTGTTGCAGCAGTTGTGGCAGATGGATCACTTAATGATATGAAGGAGGGAGTTGTAGAAATTCCTCCTTCTGATCCTATATGTAAGAAGAGAAAGAACATCGAGATGCGAGATCCTGATAATGGGTGCCCTACCATGGAGCTCCAACAGCATAATGGGTGCCCTACCATGgagctccaacagcaaaatcaCGCAACTAACCCTACCGAGGTGCGTAATACTAAGCCGAAAACCCAGCAAAAGCTTGTCAGAATCATAGTCACCGACCCTGATGCTACTGACACTGACTCTTCCCCCAGTGAAGATCAAGGAAAACCTATAATGTCGCGAGGGGAGAGGCAAATAACACAGATCACTATCAACATTACTTCAGATTCTGCTTCCTCTTTTCAAGCTACACCCTTTCAAAAATCCAAGAAATGTATCAACAGCAATGGTGGCCAAAAGAAGTTCAGGGGTGTTCGCCAGAGAAAATGGGGTCGGTGGGCTGCTGAAATCCGAGATCCAACCCGTCGGAAACGGCTGTGGCTTGGAACATTTGACACTGCAGAGGAGGCTGCCACAGAGTATGACAAAGCTGCTTTGAAGCTGAAGGGCCCTAATGCCATTACCAACTTCCCTCACTCAGGGACCATGGAGGAGATGCCGGTGCCTGCCACCGCTCGAGACAGTCCAAGCAACGACAGCTTTGCCTCATTCAGTGCACTGGCATCACCAACCTCTGTCCTGTCTTAG 894 0.4586 MKMLALDCLWWECGCFCCYASAFEVVFSLNSEVEWSCAINVISDSIMADKAHNGVAAVVADGSLNDMKEGVVEIPPSDPICKKRKNIEMRDPDNGCPTMELQQHNGCPTMELQQQNHATNPTEVRNTKPKTQQKLVRIIVTDPDATDTDSSPSEDQGKPIMSRGERQITQITINITSDSASSFQATPFQKSKKCINSNGGQKKFRGVRQRKWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAALKLKGPNAITNFPHSGTMEEMPVPATARDSPSNDSFASFSALASPTSVLS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2301 297 PRINTS Ethylene responsive element binding protein signature 204 215 IPR001471 GO:0003700|GO:0006355
Sto9g2301 297 PRINTS Ethylene responsive element binding protein signature 226 242 IPR001471 GO:0003700|GO:0006355
Sto9g2301 297 MobiDBLite consensus disorder prediction 275 297 - -
Sto9g2301 297 ProSiteProfiles AP2/ERF domain profile. 203 260 IPR001471 GO:0003700|GO:0006355
Sto9g2301 297 CDD AP2 202 262 IPR001471 GO:0003700|GO:0006355
Sto9g2301 297 MobiDBLite consensus disorder prediction 142 164 - -
Sto9g2301 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 120 296 - -
Sto9g2301 297 Gene3D AP2/ERF domain 202 261 IPR036955 GO:0003700|GO:0006355
Sto9g2301 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 120 296 - -
Sto9g2301 297 Pfam AP2 domain 203 252 IPR001471 GO:0003700|GO:0006355
Sto9g2301 297 SUPERFAMILY DNA-binding domain 203 262 IPR016177 GO:0003677
Sto9g2301 297 MobiDBLite consensus disorder prediction 144 164 - -
Sto9g2301 297 SMART rav1_2 203 266 IPR001471 GO:0003700|GO:0006355
Sto9g2301 297 MobiDBLite consensus disorder prediction 261 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2301 Sto-Chr9 26370665 26372364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2301 125 297 AP2-EREBP Transcription Factor Family AT4G27950 43.979 1.15e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto9g2301 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2301 K13434 - gmx:100800489 168.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2301 9 26370665 26372364 Sto5g4412 5 52604442 52619189 CCT
Sto9g2301 9 26370665 26372364 Sto9g2301 9 26370665 26372364 ECH