Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2298 ATGTCGTACGTGCCTCCGCACCTCAGGAGCTCCAGCTCCACTACTGTTGCTACCAGAATTTCGTCTCTAACCCTAGACACCAACGATCACAGCAAACTTGCTTTTTCCTCAAATTCCCACTTTAACAACTCTTCTACTCCCTCCACCTTCTCCAATCTCTCTCGCCGCAGCTCCGGACCTCCTTCATCGTCTCGGACCCTTCCCGTCCCCGACGCCGTCTTTCCTCACTGGCAACCGTCCGAACGCGTTTCTCGTATGAAGCCTGAGCAGGTTTCTGTTATTTCTCGCCGTGATGTAGTTTTCGGGAATATTGAAGAGGTCCGACTGCGGCTTAATCTTGATGTTACTGTTGCTTCTGACTCCCTTCCTGCACCTGCACCAATAGAATCATTTGCGGACATGTGTTTGCACCCGAGCATCATGAAGGATATTGCATATCATGAATACACAAGGCCAACTTCAATCCAGGCTCAGGCCATGCCGATTGCACTTAGTGGAAGGGATCTACTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTCACCATTCCTATGATAGAGCATTGCTTGGCTCAATCTCCAATTCGGCGTGGTGATGGTCCTTTAGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCCCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTCGAGTCCTTAAAAACTGCAATAGTCGTTGGTGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTTATTGATCACTTACAACAAGGCAATACTTCCCTTTCTagaatttcttttgttgttctaGATGAGGCTGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTGATGAGAAATCTTCCAGCGAAGCATCAAACATTGCTATTTAGTGCCACTATGCCTGTGGAGATTGAAGCACTGGCAAAGGAGTACTTAGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACTGCAAATGTTTGCCAAACtcttgtgaaggtttctgaacAAGAGAAGATCGATCGACTTCTAGATTTGCTTGTTGAAGAGGCTACACAGGCTGAAAAATGCGGTCGTCCATTTCCACTAACAATTGTATTTGTGGAAAGAAAGACAAGGTGTGATGAAATTGCTGAAGCATTAGTAGCTCAAGGGTTATCTGCAGCCTCTCTTCATGGTGGCCGTAGTCAGAGTGAAAGGGAGGCTGCTTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCCACTGATGTTGCTTCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTTATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGGAGGACAGGGCGTGCAGGATCGACAGGCCAAGCAACTTCTTTTTACACTGATCGGGATATGTTCCTTGTTGCAAATATAAGGAAAGCTATAGCTGATGCTGAATCTGGGAATGCTGTGGCATTTGCAACTGGAAAGGTTGCTAGACGGAAGGAGAAAGAGGCTGCGGCTGCACAAAAAGAGGCAAAGATTGCTTTGTCCAAGAACTTAGCTTCTGGAGCTGCTTCAATTACTATTGAGGATAAGTATAGCTCTTCCTTAAGTGACTTTATATTACTATCTGTTTTGAAATGTTGCTGCTCTAATCCCTCAACTATTCCTCGAGGCTCTGACGTTATCAGAGAAATTGATCCTCCTGTCTGGAGGTTATCATCACTTGATGATAAATCTGCAGCAGCCTGCAAATTTGCCAACTCCATAAACTTGTATTTTTCAAGCTCAATCTTCAGTTTGACACATTTCCACCAGAGCCAAGAAAGTAATCAAACCCAGGAGCTCGGTTGGCAGATAAACGACGACCAGACTTTCTTGGGGCAATCCAAGGAGAGGATGGCTCAGATCCCGTGTCTGATATACCTGAGCCTTGGGATTGAAGTTCAGTGGGTAGATTCTTCCGTAATTCTCCTGTCACATTATCATAACGTTCAGCTAGAGATCGATACATACGGTAGAATTCCTCAACAAGAGAGACTAATTCAGGTCTCTTCTGATAATACATTTCAGCCTTTTTGGCAAATGAATCTCCATCCTGTTCAATCAGCTTCAACATTCGCTTCACATTCCGGTCCATCTCTGTGA 2208 0.4461 MSYVPPHLRSSSSTTVATRISSLTLDTNDHSKLAFSSNSHFNNSSTPSTFSNLSRRSSGPPSSSRTLPVPDAVFPHWQPSERVSRMKPEQVSVISRRDVVFGNIEEVRLRLNLDVTVASDSLPAPAPIESFADMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPAKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTANVCQTLVKVSEQEKIDRLLDLLVEEATQAEKCGRPFPLTIVFVERKTRCDEIAEALVAQGLSAASLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAESGNAVAFATGKVARRKEKEAAAAQKEAKIALSKNLASGAASITIEDKYSSSLSDFILLSVLKCCCSNPSTIPRGSDVIREIDPPVWRLSSLDDKSAAACKFANSINLYFSSSIFSLTHFHQSQESNQTQELGWQINDDQTFLGQSKERMAQIPCLIYLSLGIEVQWVDSSVILLSHYHNVQLEIDTYGRIPQQERLIQVSSDNTFQPFWQMNLHPVQSASTFASHSGPSL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2298 735 SMART ultradead3 148 353 IPR014001 -
Sto9g2298 735 MobiDBLite consensus disorder prediction 35 65 - -
Sto9g2298 735 Pfam Helicase conserved C-terminal domain 360 477 IPR001650 -
Sto9g2298 735 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Sto9g2298 735 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 21 539 - -
Sto9g2298 735 Gene3D - 102 340 IPR027417 -
Sto9g2298 735 Coils Coil 215 235 - -
Sto9g2298 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 518 IPR001650 -
Sto9g2298 735 CDD DEADc 140 337 - -
Sto9g2298 735 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Sto9g2298 735 Coils Coil 518 538 - -
Sto9g2298 735 SMART helicmild6 396 477 IPR001650 -
Sto9g2298 735 MobiDBLite consensus disorder prediction 35 71 - -
Sto9g2298 735 Pfam DEAD/DEAH box helicase 153 323 IPR011545 GO:0003676|GO:0005524
Sto9g2298 735 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 539 - -
Sto9g2298 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 336 IPR014001 -
Sto9g2298 735 CDD SF2_C_DEAD 350 486 - -
Sto9g2298 735 Gene3D - 342 536 IPR027417 -
Sto9g2298 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 497 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2298 Sto-Chr9 26349270 26359736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2298 129 499 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 4.13e-69 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2298 K12823 - gmx:100818387 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2298 9 26349270 26359736 Sto9g2298 9 26349270 26359736 ECH