Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2296 CTGGGAGAGCCATCGATTTTCAAATTGATGGGGTCTGATGTTTGCGTGAACGTTTCGTGTGGCTCGGCTACTTCGCATGAATGGAAGATGGGGTGGCCTCTGCGATCTGGTGGATTTGCTCAATTCTGTAACAATTGCGGAATTTCGAAGGAATGCAAGCTTGGCACCCCTGATTTCATATCTACCTTCGAGAATTCTGTTTTCTGTGATAAATTCCACCGTGAAGAAACTGGTTGGAGGGACTGCAGCTTTTGCAATAAACCTATCCACTGTGGATGCATAGTATCTAAGTCATTGTTTGACTACCTTGATTTTGGCGGTATAGGATGCGTTAGCTGTATAAGGGCTTCCCAATATCGTTTGATGCAGAATGCCAAAATACCTAATGGAGCTGTTACATCAACCATAAATGATGCAAATGATCGACATATTGCTCATATCGATGGTAGACCTTCTGTGGATAGTGTCGATGAAGGAAAACTTATGCAATTATGCAGAGTTGTTGACGCTAGTGAAACTAGTCATTGGCATCAACCTCAGAGAGATGAAATAATTTCACCTAATGGACCAAATAGCCAAGAAGTGAAGTGTCCAATCAGGGAAGTGGATTCAGGATTTTCAAATCTGACCACAACATCTATTCAACCAATAACATTTCCTATGTTAGAAAATACTAGACCAACATGGGAGATTAAAAATATGCATGAACCAACTGCACAGCCATCTTTGAGTATGTCCCTGGGAACTCCATCAGGAAACCCTGTCCTGCCTTCTGCTAGAGAGAGTGTAGAAGAAAGGCTTGAGGGCAAACAATCTCCTCCTTTTCATCATGGGCAAAGGTCTCGCCCTATATTGCCTAAACCATCGAAGACTGGGATTATCATGAATGTAGAAACAAATAAGGGAATGAATTTTCAAGCAAGGATTGCCCGGCCACCTGCAGATGGGAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAAGAGTTGGAGCAACTGTCTGGAAATTTGAAGTCCAATGTAGTACCATTGTTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTATTTTCCACCTATTTCTCAATCGGAAGGTCTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTTAGATTTTGGCCAAACAATAACAGCAGGATGTATGTACTGGAGGGTGTGACCCCTTGCATACAGGCCATGCAATTATGTGCGGGTGATACAGTAACATTTAGTAGGATAGATCCTGGGGGAAAGCTTGTTATGGGTTTCAGAAAGGCATCAAATTCTGTTGAAACACAGGATGTCTCTACACATTCTAATGGGGTTTCGAAGGAAGCAACCTTTTCTGGTGCAAATGAAAACCTGCCTGCAGGAAGTAGTTATTCTGATCTTCTCCATTCAATGGAAGGGAACAGGGAACCTCACTCAAATGGACAATCCGAACACCTTCATTTGGATAGCAGGGTTTCTGATTTGCCTAAAACTGAAAATTGTGGAGAGATGACAAACAATAACTCTCTGCAGCAATCGATTTCGGGTTCGGAGAAGAAGAGGACTCGAAATATTGGGCCTAAAAATAAGAGGTTGCTCATTCATTGTGAAGATGCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCACCACCTAGTGTTCAGCCAAGCATTGTCACAATTGAGGACCATGTATTTGAAGAGTATAATGAACCCCCGGTTTTTGGAAAGAGAACTATATTCAGCACCTGTCCATCTGGTCTAGATTCTATGGAACTAGAATCATATGACCTAGCTAGTATTGGCCTGCCAAGGGGACAAGAACAGTGGGCTCCATGTGATGATTGCTCTAAATGGAGAAGGCTACCTGCAGATGTTCTTCTACCTCCCAAGTGGACTTGTTCTGAAAATGTCTGGGATGCAAGCAGGTCTTCGTGTTCTGCACCCGAGGAGCTAAGTTCTAAGGAATTGGAAAATCTTCTCAAAACCAGCAAAGGATATTTGCAAGATTCTAAGAAGCGTAGAGTCACAGAAAATAACAAGTCACCCCAAGAACTTGAACCTTCTGGCTTAGATGCTCTTGCTAGCGCAGCAGCCTTAGGAGACAATCTAGTTGATCCTTGTGATTCATCAGGCAGTGCTGCCACAACCAAACATCCAAGACACCGTCCTGGCTGCACGTGCATCGTGTGCATTCAGCCACCAAGTGGAAAGGGAAAACATCACTCCACATGCACTTGCAATGTGTGCATGACTGTGAAAAGGCGTTTCAAAACCCTTATGCTGCGCAAGAAGCAGCGCCGATCAGAGCGCGAAGCAGATGCTACCCAGATGGATCAAAGAGATGAATCAGATATGAATGGAGTACCAACAGAAGACACAAGTCATTTGGAGAAATCTGGAAGTATAAACAAAAGACAGCTTGAGGTGGGTGAGTCCAGTGCTGGACAAATAGATCTGAACTGTCATCCTGATCGGGAAGACATGGAAGTTGATGTACCGGAACCGAGCATGAATTGTCAACTTGAAGGTCCAAACTATCCATTACAGGAATTTATGAATCAAAATGGCCCTGCTGGAGGAGAAAGTCAGAGATATTTCTCTAATGGGGGAAACTTGGCATCAATTGTctgtgagagagaaagaagagacaATGAGGAATACTATGATCCCAATTCAAATCAGAAGAAGACTCAGAACAATCATACTGAATga 2793 0.4311 LGEPSIFKLMGSDVCVNVSCGSATSHEWKMGWPLRSGGFAQFCNNCGISKECKLGTPDFISTFENSVFCDKFHREETGWRDCSFCNKPIHCGCIVSKSLFDYLDFGGIGCVSCIRASQYRLMQNAKIPNGAVTSTINDANDRHIAHIDGRPSVDSVDEGKLMQLCRVVDASETSHWHQPQRDEIISPNGPNSQEVKCPIREVDSGFSNLTTTSIQPITFPMLENTRPTWEIKNMHEPTAQPSLSMSLGTPSGNPVLPSARESVEERLEGKQSPPFHHGQRSRPILPKPSKTGIIMNVETNKGMNFQARIARPPADGRGKNQLLPRYWPRITDQELEQLSGNLKSNVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVTFSRIDPGGKLVMGFRKASNSVETQDVSTHSNGVSKEATFSGANENLPAGSSYSDLLHSMEGNREPHSNGQSEHLHLDSRVSDLPKTENCGEMTNNNSLQQSISGSEKKRTRNIGPKNKRLLIHCEDALELRLTWEEAQDLLRPPPSVQPSIVTIEDHVFEEYNEPPVFGKRTIFSTCPSGLDSMELESYDLASIGLPRGQEQWAPCDDCSKWRRLPADVLLPPKWTCSENVWDASRSSCSAPEELSSKELENLLKTSKGYLQDSKKRRVTENNKSPQELEPSGLDALASAAALGDNLVDPCDSSGSAATTKHPRHRPGCTCIVCIQPPSGKGKHHSTCTCNVCMTVKRRFKTLMLRKKQRRSEREADATQMDQRDESDMNGVPTEDTSHLEKSGSINKRQLEVGESSAGQIDLNCHPDREDMEVDVPEPSMNCQLEGPNYPLQEFMNQNGPAGGESQRYFSNGGNLASIVCERERRDNEEYYDPNSNQKKTQNNHTE 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2296 930 MobiDBLite consensus disorder prediction 454 507 - -
Sto9g2296 930 MobiDBLite consensus disorder prediction 239 256 - -
Sto9g2296 930 SUPERFAMILY DNA-binding pseudobarrel domain 347 450 IPR015300 -
Sto9g2296 930 MobiDBLite consensus disorder prediction 910 930 - -
Sto9g2296 930 Pfam CW-type Zinc Finger 635 677 IPR011124 GO:0008270
Sto9g2296 930 MobiDBLite consensus disorder prediction 454 490 - -
Sto9g2296 930 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 12 883 - -
Sto9g2296 930 Gene3D - 633 688 - -
Sto9g2296 930 MobiDBLite consensus disorder prediction 239 290 - -
Sto9g2296 930 ProSiteProfiles Zinc finger CW-type profile. 630 680 IPR011124 GO:0008270
Sto9g2296 930 Gene3D - 328 455 IPR015300 -
Sto9g2296 930 CDD B3_DNA 348 449 IPR003340 GO:0003677
Sto9g2296 930 MobiDBLite consensus disorder prediction 791 815 - -
Sto9g2296 930 ProSiteProfiles B3 DNA-binding domain profile. 350 451 IPR003340 GO:0003677
Sto9g2296 930 MobiDBLite consensus disorder prediction 523 541 - -
Sto9g2296 930 MobiDBLite consensus disorder prediction 787 829 - -
Sto9g2296 930 MobiDBLite consensus disorder prediction 694 715 - -
Sto9g2296 930 MobiDBLite consensus disorder prediction 523 544 - -
Sto9g2296 930 Pfam B3 DNA binding domain 350 449 IPR003340 GO:0003677
Sto9g2296 930 MobiDBLite consensus disorder prediction 261 275 - -
Sto9g2296 930 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 883 - -
Sto9g2296 930 SMART B3_2 350 451 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2296 Sto-Chr9 26309334 26316054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2296 10 861 B3 DNA Binding Superfamily AT2G30470 47.801 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto9g2296 B3 2.5e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2296 9 26309334 26316054 Sto5g4402 5 52551593 52556825 CCT
Sto9g2296 9 26309334 26316054 Sto9g2296 9 26309334 26316054 ECH