Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2281 ATGGAACCCTACACATTTTCTTCTGCTCTAAGCCTTCTCATTGCTCTCTTATTCATCACCATTCACCTCCAAGGTTCCTCCACTGCCGCTGCCGGTTATGGCGGTTGGGAGACTGCTCACGCCACTTTCTACGGCGGTGGTGATGCCTCCGGTACAATGGGAGGAGCATGTGGGTATGGGAATTTGTACAGTGAAGGGTATGGAACAAACACAGCAGCACTAAGCACAGCTCTATTCAACAATGGGTTAAGCTGTGGAGCATGTTATGAAATGAGATGCACAAGTGACCCAACATGGtgcaacccttcttcttctatcaTTGTCACTGCTACTAATTTTTGCCCTCCAAACTTGGCTTTGCCAAACAACAATGGTGGATGGTGCAATCCTCCTCTCCAACACTTTGATTTGGCTCAGCCTGCCTTCCTCCAAATTGCTCACTACAAGGCTGGCATTGTCCCTGTCTCCTTCAGAagAGTGCCTTGTATGAAGAAGGGAGGTATAAGGTTCACCATTAATGGTCACTCTTACTTCAACTTGGTTTTAATCACCAACGTTGGAGGTGCAGGGGATGTCCATGCAGCCTCCATCAAAGGCTCCAAATCTGGCTGGCAACCCATGTCTAGAAACTGGGGGCAAAATTGGCAAAGCAACTCCTACCTTAATGGCCAATCCCTATCTTTCCAAGTCACCACCAGTGATGGTAGAACCCTCACAAGTTACAACGTGGCGTCACCCAATTGGCAATTCGGCCAGACTTTCCGAGGTCgccaattttaa 780 0.4654 MEPYTFSSALSLLIALLFITIHLQGSSTAAAGYGGWETAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGLSCGACYEMRCTSDPTWCNPSSSIIVTATNFCPPNLALPNNNGGWCNPPLQHFDLAQPAFLQIAHYKAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHAASIKGSKSGWQPMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTLTSYNVASPNWQFGQTFRGRQF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2281 259 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Sto9g2281 259 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Sto9g2281 259 Gene3D - 166 259 IPR036749 -
Sto9g2281 259 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Sto9g2281 259 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Sto9g2281 259 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Sto9g2281 259 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Sto9g2281 259 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Sto9g2281 259 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Sto9g2281 259 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Sto9g2281 259 PANTHER EXPANSIN 7 259 - -
Sto9g2281 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Sto9g2281 259 PANTHER EXPANSIN-A15 7 259 IPR002963 GO:0009664
Sto9g2281 259 Gene3D - 21 163 IPR036908 -
Sto9g2281 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Sto9g2281 259 SMART dpbb_1 71 157 IPR007112 -
Sto9g2281 259 Pfam Lytic transglycolase 71 157 IPR009009 -
Sto9g2281 259 Pfam Expansin C-terminal domain 168 244 IPR007117 -
Sto9g2281 259 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2281 Sto-Chr9 26198038 26199522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2281 8 259 Expansin Gene Family AT2G40610 76.680 1.09e-139 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2281 - - gmx:100816848 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2281 9 26198038 26199522 Sto5g4399 5 52535516 52536437 CCT
Sto9g2281 9 26198038 26199522 Sto9g2281 9 26198038 26199522 ECH
Sto9g2281 9 26198038 26199522 Sto9g2611 9 28484161 28488547 ECH
Sto9g2281 9 26198038 26199522 Sto5g4399 5 52535516 52536437 ECH