Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2270 ATGGCGGCGATTCAGAAGAAGAACCATAATAGCATCACCAACAAGATGAAGAtaacgacgacgacgacgtaTCGTGCGGATCAATTAACGAGAGAACCATCAAACATCTCAAATTACGAAGGCTACCACGGAGGCGAAGCGGCATCGGTTCCATTCACGTGGGAATCGGAGCCAGGAACTCCAAAGGTCAAACTCCGAGACGCCACTCTGCCTCCTCTCACGCCTCCGCCATCATACTCTTGCGGTAATTCAAACAATAATAAGAGATCCGCCATGAAAGCTCATAAGAAAAACTCTTCCAATAAGTCTAGTAGTCTCTTCTATGCTATATTCCCCAAGCGCGTGACTGCCTCCAGAAAAGCGCGTGTTCCTCCTTCGCCCGCTAATTATTCTTCGGCGTCTTTGTCGTCGTCTCCTTCGtcttcgtcgtcgtcgtcgccgGTGAGGCTGGGATCGCGGTCGGTGCCGGCGTCGCCGATGAGATGTCCGAGGAAATTAGATCGAGATGGTGGTTATCAtgatgaggaagaggaagatcTTTACGAAGCGCCAGCAGTTTCGGGATTGTGCTTCGGCAATGCGAGGTCGAGAGGGTGCTATTCGTCCATGATCAAGAAGAGAAAGTCCTTCCTCCTCACAACCACAACCCCACCACTCAGATCAGGACAATCTAGAGGCATGCTTGGATGTCCAGAAACAGAAAGAGCAGGAGAGATAGCAAAGAACACAACAGAAACAGCAGCAGCAGCATCTTGTCAAATGGGAAGGAGACATTTCTATGGACCAGCAGCTTCAGGGACAACCTTAAACACAGTCACTCCTTGTGCTGCATGTAAGCTTCTGAGAAGAAGATGTGCTGAAGAATGCCCTTTCTCCCCTTACTTCTCACCCCATGAACCTCAAAAGTTTGCAGCTGTTCATAAAGTTTTTGGTGCAAGCAATGTCTCCAAGATGCTAATGGAGGTGCCTGAGGGCCAAAGAGCAGATGCTGCAAATAGTTTGGTTTATGAAGCAAACCTGAGGTTGAGGGACCCAGTGTATGGATGCATGGGTGCAATCTCAGCTTTGCAGCAACAAGTTCAGACACTACAAGCAGAGGTAAATGCAATAAGAGCTGAGATTCTGAAGTATAAGTACAGGGAGGCTGCTAGTCAGATCATTTCTTCTCATGGAGGGGTTTTGGTTTCTTCAGTGGAAGATCCCAATATTTCTGAAGaGGCTTCAAGTTTTTGTTCTTGCATATGGCTTTTAGCCATAGACATGCAGACACTGTGA 1275 0.4541 MAAIQKKNHNSITNKMKITTTTTYRADQLTREPSNISNYEGYHGGEAASVPFTWESEPGTPKVKLRDATLPPLTPPPSYSCGNSNNNKRSAMKAHKKNSSNKSSSLFYAIFPKRVTASRKARVPPSPANYSSASLSSSPSSSSSSSPVRLGSRSVPASPMRCPRKLDRDGGYHDEEEEDLYEAPAVSGLCFGNARSRGCYSSMIKKRKSFLLTTTTPPLRSGQSRGMLGCPETERAGEIAKNTTETAAAASCQMGRRHFYGPAASGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTLQAEVNAIRAEILKYKYREAASQIISSHGGVLVSSVEDPNISEEASSFCSCIWLLAIDMQTL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2270 424 Pfam Lateral organ boundaries (LOB) domain 274 370 IPR004883 -
Sto9g2270 424 PANTHER LOB DOMAIN PROTEIN 262 405 - -
Sto9g2270 424 MobiDBLite consensus disorder prediction 50 99 - -
Sto9g2270 424 Coils Coil 353 373 - -
Sto9g2270 424 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 262 405 - -
Sto9g2270 424 ProSiteProfiles LOB domain profile. 273 374 IPR004883 -
Sto9g2270 424 Pfam Protein of unknown function (DUF688) 12 88 IPR007789 -
Sto9g2270 424 MobiDBLite consensus disorder prediction 125 152 - -
Sto9g2270 424 MobiDBLite consensus disorder prediction 118 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2270 Sto-Chr9 26104050 26114630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2270 234 384 AS2 family AT2G30340 70.395 2.07e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto9g2270 LOB 5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2270 - - gmx:100813489 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2270 9 26104050 26114630 Sto9g2270 9 26104050 26114630 ECH