Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2268 ATGGAGATATCCTTGTTAAAGGTGCTCGTTAATGGCATATCCTCATTTTTGCATCTATCATTTTCTGGGAACATGAACTCAGAACCTGTTTCAAAATATTACCAAAAGGCAGAGGAGACACTTAAGTTATTGAAGCCGATAGTTGATGCATTTGTTAATTCTGAATTAACTTCTGATGAAGTGCTTAATAAGGCATTTGAAGAAGTGGCTCAGGCTGTTGATGAGTTGAGGGAGATTTTTGGGAACTGGCACCCATTGTCTAGCAAAGTTTACTTTGTTATCCAAGTTGAATCCTTGATATCTAAGATTCAGACTTCAGGACTCGATATCTTCCAGCAGCTGAAGGCTTCTCATCTATGTCTCCCTGATGGAATGACTACTGAAACATTGTTAGTCATTAAAGATGCTATTAGAGAACAAGTGGAAGGCATAGGACCTAGTTCAGAGGTCGTGGCAAACATTGCTGAGAGCCTGGGCCTGAAGTCTAACCAAGAGATTCTGATCGAGGCTGTAGCCCTTGAAAAGCTGAAGGAGAATGCTGAACAAGCTGAAAAGAATGCAGAAGCGGAATATATTGATCAAATGATTACTCTTGTAACTCgtatgcatgagcgtcttgttATGCTTAAGCAAGCCCAGAGCAGTAGCCCAGTTCCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTAATGACGGATCCTGTGATCGTGGCATCAGGGCAAACCTATGAACGTGCTTTCATAAAGAACTGGATTGATCTTGGGCTTACTGTCTGTCCCAAAACTCGTCAGACTCTGGCTCACACAAACTTAATACCTAACTACACTGTAAAAGCTTTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGCTGAACCCATAATGTCCACAAACTTAAATCAAGCATCTCTTCTTCATGGGTATATGGAATCTGGTGCGACCAGGGATTCTCCTGTTTTTCCTTCCAGGGGAATCCATAGAGAGGGAACTTCACCATTTCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGCATGGCTAATGGGCAGTCCTTAGATATTGCAATGATATCTCTGACAGGTTCTGATGAGAGGTCTGCTAGCTCAGATGAGCGGAGTGAGGATTCAGTTGTCCAACCATCAATATCTCAATCTATAACTGAATCTTCCAATGCCTTAAGCTCTGAACAATCTAAAACACATGTTAGAGATGCTTCTGAGTCTGCTCTGTCAACCACTCCAGGCAACAGTAGGGATGCTTCCATGGAGGTAAATTCAGGGCCTGATGCTACTGATGCTGCTGCCATCAATGCTCCACAAAGGGAACCTGAGATCTCACCCCGACTAATGGAGACAAGGTCTCGAAACCAAAGTATATGGCGGCGGCCATCAGAGAGATTTGTTCCTAGGGTGGTGCCCTCTGCTGTTGAAACAAGAGCTGATCTTTCTGGTATTGAAGTCCAGGTTCGGAGTTTGGTTGATGACTTGAAGAGCTCTTCTCTTGATACTCAAAGGGAGGCAACAGCAAAGCTTCGCCTTCTTGCCAAGCACAACATGGATAATCGGCTTGTGATTGCAAGCTGTGGAGCCATTAGTTTATTAGTTGACTTACTTCAATCAACTGACACAATGATCCAGGAAAATGCTGTAACAGCTCTTCTCAACTTATCAATCAATGATAACAACAAAACTGCAATTGCCAATGCTGGTGCAATTGATCCTCTCATTCATGTCCTTGAGACAGGGAGCCCTGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTAAGATAGGGAGGTCTGGGGCAATTAGGCCACTGGTTGATTTATTAGGGAATGGTACTCCAAGAGGGAAGAAAGATGCTGCCACTGCATTGTTTAATTTGTCAATATATCATGAAAACAAGGGTCGGATTGTGCAAGCTGGTGCTGTGAAGCACCTTGTTGAATTAATGGACCCTGCAGCTGGAATGGTTGATAAGGCTGTGGCTGTTTTGGCAAATCTTGCCACAATTCCGGAAGGAAGAACTGCCATTGGTCAGGAAGGTGGGATCCCTGTTCTGGTTGAGGTCGTTGAGTTGGGTTCTGCAAGAGGAAAGGAGAATGCAGCAGCCGCTCTTCTACATCTTTGCTTACACAGTACTCGATTTTTAAGCATGGTGCTCCAAGAAGGAGCTGTCCCACCGTTAGTAGCTTTGTCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTTAACCAATTTAGAAGTCAAAGACATGGTAATGCGGGGAGAGGCTGA 2331 0.4376 MEISLLKVLVNGISSFLHLSFSGNMNSEPVSKYYQKAEETLKLLKPIVDAFVNSELTSDEVLNKAFEEVAQAVDELREIFGNWHPLSSKVYFVIQVESLISKIQTSGLDIFQQLKASHLCLPDGMTTETLLVIKDAIREQVEGIGPSSEVVANIAESLGLKSNQEILIEAVALEKLKENAEQAEKNAEAEYIDQMITLVTRMHERLVMLKQAQSSSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPAEPIMSTNLNQASLLHGYMESGATRDSPVFPSRGIHREGTSPFHPRSTSEGSLSGMANGQSLDIAMISLTGSDERSASSDERSEDSVVQPSISQSITESSNALSSEQSKTHVRDASESALSTTPGNSRDASMEVNSGPDATDAAAINAPQREPEISPRLMETRSRNQSIWRRPSERFVPRVVPSAVETRADLSGIEVQVRSLVDDLKSSSLDTQREATAKLRLLAKHNMDNRLVIASCGAISLLVDLLQSTDTMIQENAVTALLNLSINDNNKTAIANAGAIDPLIHVLETGSPEAKENSAATLFSLSVIEENKIKIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSTRFLSMVLQEGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2268 776 Gene3D - 566 669 IPR011989 -
Sto9g2268 776 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Sto9g2268 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515
Sto9g2268 776 Pfam Armadillo/beta-catenin-like repeat 606 643 IPR000225 GO:0005515
Sto9g2268 776 Pfam Armadillo/beta-catenin-like repeat 563 602 IPR000225 GO:0005515
Sto9g2268 776 Pfam Armadillo/beta-catenin-like repeat 524 561 IPR000225 GO:0005515
Sto9g2268 776 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Sto9g2268 776 Gene3D - 478 565 IPR011989 -
Sto9g2268 776 Gene3D - 670 772 IPR011989 -
Sto9g2268 776 PANTHER U BOX DOMAIN-CONTAINING 468 772 - -
Sto9g2268 776 PANTHER U BOX DOMAIN-CONTAINING 7 361 - -
Sto9g2268 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 299 IPR013083 -
Sto9g2268 776 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Sto9g2268 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 615 657 IPR000225 GO:0005515
Sto9g2268 776 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 361 - -
Sto9g2268 776 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 468 772 - -
Sto9g2268 776 Coils Coil 163 193 - -
Sto9g2268 776 MobiDBLite consensus disorder prediction 336 351 - -
Sto9g2268 776 SUPERFAMILY RING/U-box 210 294 - -
Sto9g2268 776 MobiDBLite consensus disorder prediction 377 428 - -
Sto9g2268 776 CDD RING-Ubox_PUB 224 266 IPR045210 -
Sto9g2268 776 SUPERFAMILY ARM repeat 493 765 IPR016024 -
Sto9g2268 776 MobiDBLite consensus disorder prediction 365 461 - -
Sto9g2268 776 MobiDBLite consensus disorder prediction 317 351 - -
Sto9g2268 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 656 697 IPR000225 GO:0005515
Sto9g2268 776 SMART arm_5 645 684 IPR000225 GO:0005515
Sto9g2268 776 SMART arm_5 522 562 IPR000225 GO:0005515
Sto9g2268 776 SMART arm_5 563 603 IPR000225 GO:0005515
Sto9g2268 776 SMART arm_5 685 725 IPR000225 GO:0005515
Sto9g2268 776 SMART arm_5 604 644 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2268 Sto-Chr9 26089002 26092451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2268 180 776 U-box Gene Family AT2G23140 62.559 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2268 - - gmx:100811250 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2268 9 26089002 26092451 Sto5g4389 5 52470189 52473289 CCT