Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2241 ATGGTGCTTATCCATATTGGGGTTGTGAAAATTCTAGTGCAGCCTTTGTTATGGAGAATTGTGGGATTTGCATCAAGTGCAGTTGGATTCCTCTGCTATGCTCTAAGCTCCTCTTTCACTCATCTATTTGGGGATTGGAACTTGCTCAAGATCATTATTTATAGCGCTCTAAGTTGTATCATTTGCAGCTTCTTGTTATATGCAAAGAAATGGAGTGTGTCAAGGAGTTCATTGGTGAAAGTTCAAATGGGATTTTTGGTGTTGATCATCATCTCTGTATACTCCTTCTTCTACGACAAAGCCGTGAATGGTTCAAAACCAGATGTATTAAGCCTGGTATCTTGTGGTGCCTTCGCTTTCATGTCTTTTAGCCTCTCAAGGCTCACTGACCTGGGATTCGAAGTGGATCTGCTAAACTTTTTTCTGGGATGTTTGATCCTACTACTGATGAAGATCCATTTGATGTTAGGCTTGGTTGGAGCAATTTTAGGTTATTCCCTCACACTCTTTCGTTGGTGTTTGGAGATCCAGATGGAGAATATGGAAAGTGGTAATATGATGGAGGATGATGTAGTAATAGATGTTGATTCTGGGAAGGAGGGTGAATTAATGGAAGGAAATGAGAAATCAGAGGAAGGGATAAGGAAGAGGAAGTGGGCGGGTGAGGGTATAAACACGAGGAAGGTGTACAGAGGAGTGAGGAAGCGTTCTTGGGGAAAATGGGTGGCTGAGATTCGTGTTTATAGGGAGCGTAAGACGACTCGCCTCTGGCTTGGCACTTTCGACACGGCAAAAGAAGCTGCCATGGCTTATGATCGCGAGGCTTTTAAGCTGAGAGGAAAGAATGCTAGGCTCAATTTTCCTCATCTCTTCTTCAATAAAGATTCTACGTCAAAGCAGCCTGAGTTAACAACCCCAGAAGGAATTGGTTTGGGGCGAAATGGCGGCTTGGTTGGGGTCCTGGAACTCCTGTGGCTGTGTGGGATGATTTCGAGACGTTTCAATCACAGCTTCCTCTTCTTTATGTTATATGCTAAGAAATGGAGAGTGTCAAGGAGTTGGGTGGTGAAAGCTCAAATGGGATTTTTGGTGTTGATGCTCATCTCCGTCTACTCCTTCTTCTACGACAAAGGCGTGAATGGATCAAAACCAGATTTACTAAGCCTGCTATCTTGTGCTGCCTTTGCTTTCATGTCGTTTAGCCTCTCAAGGCTCACTGACCTGGGATTCGAAGTGGATCTCCTAAACTTTTTTCTGGGATGTTTGATCCTACTACTCATGAAGATCCATTTGATGTTAGGCTTGGTTGGAGCAGTTTTTGGTTATTCCCTCACACTCTTTCGTTCCTCTCTGGATTTCCAGATGGAGATTGGGAGTGCTACTACGTTCGATCATGTAGTTTTAGATATTATTGACTACTCTGCTGTACCTGTACACACCGGAGCTGATAGTAACCATGATTTCCAAATGGATAATAGCGGCTCCCACGAAGAATTGTTTGCAGTTGCAGAGACCTTCTCGAGGTTGAAGTGGAACCCTTCACTTAGTAGCCTGGTTAGCTTATTTCTGAAATGGAGCCATTTAAAACATGATCCACTGGTGTATCTTCAGGATTTGCCCATCCTTACTCATCTTGAACTACTTCATGCTTGTGACGCCGACACACTGTGTTTTAAATCTGGAAAGTTCAAGAACCTAAAGATCTTGGGTGTTGACAAGTTTGATGAACTCAGAGAGGTGAATGTGGAGAAGGGTGCAATGCCTTGCCTGGAAAAGCTGACTATCCAACGCTGTGAATTGTTGAAGAAGGTGCCATCGGGCATTCAACACTTGACCAAGCTCAAAGTCCTAGAGTTTATCGATATGCCCAATGAACTGATCGCCACATTACGTCCAAATGGTAGGGGAAAAGATTATTGGAAAGTTGCACACATACCACAAGTGTATTCTATCTACTGGAGAGATGGTGGTTGGGATGTTCATACATTAGACAGTTACAAAGAATGTTCTCATCCTAGCTCGTTTTGGTATTGTCATAACTCATGA 2046 0.433 MVLIHIGVVKILVQPLLWRIVGFASSAVGFLCYALSSSFTHLFGDWNLLKIIIYSALSCIICSFLLYAKKWSVSRSSLVKVQMGFLVLIIISVYSFFYDKAVNGSKPDVLSLVSCGAFAFMSFSLSRLTDLGFEVDLLNFFLGCLILLLMKIHLMLGLVGAILGYSLTLFRWCLEIQMENMESGNMMEDDVVIDVDSGKEGELMEGNEKSEEGIRKRKWAGEGINTRKVYRGVRKRSWGKWVAEIRVYRERKTTRLWLGTFDTAKEAAMAYDREAFKLRGKNARLNFPHLFFNKDSTSKQPELTTPEGIGLGRNGGLVGVLELLWLCGMISRRFNHSFLFFMLYAKKWRVSRSWVVKAQMGFLVLMLISVYSFFYDKGVNGSKPDLLSLLSCAAFAFMSFSLSRLTDLGFEVDLLNFFLGCLILLLMKIHLMLGLVGAVFGYSLTLFRSSLDFQMEIGSATTFDHVVLDIIDYSAVPVHTGADSNHDFQMDNSGSHEELFAVAETFSRLKWNPSLSSLVSLFLKWSHLKHDPLVYLQDLPILTHLELLHACDADTLCFKSGKFKNLKILGVDKFDELREVNVEKGAMPCLEKLTIQRCELLKKVPSGIQHLTKLKVLEFIDMPNELIATLRPNGRGKDYWKVAHIPQVYSIYWRDGGWDVHTLDSYKECSHPSSFWYCHNS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2241 681 SMART rav1_2 229 294 IPR001471 GO:0003700|GO:0006355
Sto9g2241 681 Gene3D AP2/ERF domain 229 289 IPR036955 GO:0003700|GO:0006355
Sto9g2241 681 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Sto9g2241 681 PRINTS Ethylene responsive element binding protein signature 254 270 IPR001471 GO:0003700|GO:0006355
Sto9g2241 681 CDD AP2 230 290 IPR001471 GO:0003700|GO:0006355
Sto9g2241 681 ProSiteProfiles AP2/ERF domain profile. 229 288 IPR001471 GO:0003700|GO:0006355
Sto9g2241 681 PANTHER EXOCYST COMPLEX PROTEIN EXO70 326 484 IPR004140 GO:0000145|GO:0006887
Sto9g2241 681 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 181 IPR004140 GO:0000145|GO:0006887
Sto9g2241 681 SUPERFAMILY L domain-like 509 626 - -
Sto9g2241 681 Pfam AP2 domain 229 280 IPR001471 GO:0003700|GO:0006355
Sto9g2241 681 Gene3D Ribonuclease Inhibitor 467 631 IPR032675 -
Sto9g2241 681 PANTHER PROTEIN, PUTATIVE-RELATED 15 181 - -
Sto9g2241 681 PANTHER PROTEIN, PUTATIVE-RELATED 326 484 - -
Sto9g2241 681 SUPERFAMILY DNA-binding domain 229 289 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2241 Sto-Chr9 25890184 25894999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2241 228 294 AP2-EREBP Transcription Factor Family AT2G20880 80.597 1.49e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g2241 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2241 K13457 - fve:101314286 234.958