Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2167 ATGTGCAGTGGTTCCAAGAGGAAACCTTCTCAATCAGGATTTGCTATGGAGGGTGGTGAATATGGGAAACAAGAAAGACAGCTGCATCATAGAATTTCTCTTTTGCTTGAACTCTCAGCCTCAGATGATCTAGGGCTTCTCAAAGATGCAGTTGAACAAGAAGGTCTTGATGTTGATGAGGTGGGTTTATGGTATGGAAAGAGGATTGGCTCAAAGAAATTTAGTTACGAAGAGAGGACACCTCTAATGATTGCTGCTATGTTTGGAAGCAAAGGAGTAGTAAGTTATTTACTTGGAACAGGCCGTGTCGATGTTAACCGGTCTTGTGGGTCCGATGGAGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCTTCTTCCCCTGAGGTTGTCAAGCTTTTGCTTGATGCTTGCGCAGATGGTAGTGCTATTGATGCTAATGGTAACCGACCATTCGACTTGATTCCCTCTGTGGCTAATTCTATCTCCAATTCAAGGAAGAGGATGCTAGAAGCCACACTGAAAGGTACCAAATTGATTGATGAGGTGTGTTTTTCATTTGATGAATCAGTTAGCCTAATGGAGGGTCAACAGAAGAAAGATTATCCTGTTGATCTTTCTCTTCCTGACATAAAGAGTGGGATATATGGAACTGATGAGTTCAGGATGTATACCTTCAAGGTGAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGTCCCTTTGTTCATCCCGGGGAAAACGCTAGGCGACGTGATCCTAGGAAATATAACTATACTTGTGTCCCTTGTCCGGAATTTCGAAAGGGATCGTGCAGCAAAGGGGATGCCTGTGAGTATGCACATGGTATTTTCGAGTCCTGGCTTCATCCTGCCCAGTATCGGACACGCCTTTGCAAGGATGAAGGTGGTTGTACCAGAAGAGTTTGCTTCTTTGCTCACAAGCTTGAGGAGCTTCGCCCTTTGTATGCTTCCACTGGTTCAGCTATACCTTCTCCCAGATCTTTTTCAGCTAGTTCTTGTTCATTGGATATGGGACCACTTAGCCCTCTCTCTTTAGGTTCTCCATCAGTCATGCCACCTCCAACCTCAACACCTCCTTTGACTCCTTCAGGTGCATCTTCTCCCATGGGTGGAGCCATGTGGCCTAGTGGGGGAGGAGTTCCTACCCTGCAAATGCCAAGAAGCAGATTGAAAACTGCTTCAAGTGCTAGAGATATTGATTTAGATATTGATTTGATTGGACTTGAAAATCATCTACGAATGCAGCAGCTAATGATGGATGAGATGTCAGGTTTTTCTTCCCCATCTGGCTGGAAGAATCCCATGCCTAATAGTCCTTCTTTTGCTGTCTCTTTGGGTGATCAAGCCAGGGAGCCAAATAGGCTTGTAGGAGTGAAGCCTACTAACCTTGAAGACATTTTTGGGTCTCATGATCCTTCAATTTTGCCTCAGTTACAATCTCCAACTGGAATCCGGGCGTGCCAGAACGCTAACCTGCATCTGCGAAGCTATTGTTCCAGCCTTTCCAATTCAAATGTGATGGGATCACCATCAAGGAATGATCCATCTGGAGCAGCAGCATCCACAATGGCCTTGAATCCAAGACTTGCTGCCTTTTCTAAGCGAAGCCAGAGCTTCATTGAGCGCAGCGTGGTGAATCGTCATCCGGAGCTTTCTTCTCCAGTTTCTGCTGCAACAAAGCCTTGTGCCTTCTCGAATTGGGGCTCCCCTGATGGAAAACTAGACTGGACCATCCATGGAGAAGAGCTGAATAAGCTGAGGAAATCTGCATCTTTTGGATTTCGAAGCGGCAGTAATAATACCAGAATGCCAGAAAATGTTGATGAACCAGATGTTTCTTGGGTTCATTCTATTGTTAAGGACCCTCCGGCGGAATCTGGTCAATTTATCTTCGAAGAGCAACAACAGAAGAAGATCCAATGCCATCCTAACAATGGAAGTGATGTAGTTTCAGCTTGGATGGAGCAATTTAACATGGAGCAAGAGCAAATGAGTGTTGGTAACTTCTCGAAGAAGTTTCCCATCGTTTTTTCTCAGAGACATTTCATCGAACACCTTCCAGCTCTGTTTCTCCTTCTCGCTCAAAACCTTCCCAGAAGACACCTTTTCTCTCCGATTTTCCTTCAATTTCCTTCTCTGCTTCAATTCCGCGAAACCCATTTCTCTCACCCTTCCTCTGGATTCAAACTCCTCGCCTCCTTCAAAGCTGAGCACCAAGAATTTATCGGTCTCCAGCATGAGAAAACCCGGAACCTCCCGAAACGACAAGGTGGATCTCACCCTCCGATGAATCCCCTGCATCCGATCGCATTCCCCGAAGCATTCCGCGGAATTCATGGATCGGCTTCGCGAGAGCGAGCTGGCGGATGA 2403 0.4611 MCSGSKRKPSQSGFAMEGGEYGKQERQLHHRISLLLELSASDDLGLLKDAVEQEGLDVDEVGLWYGKRIGSKKFSYEERTPLMIAAMFGSKGVVSYLLGTGRVDVNRSCGSDGATALHCAVAGGSASSPEVVKLLLDACADGSAIDANGNRPFDLIPSVANSISNSRKRMLEATLKGTKLIDEVCFSFDESVSLMEGQQKKDYPVDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYNYTCVPCPEFRKGSCSKGDACEYAHGIFESWLHPAQYRTRLCKDEGGCTRRVCFFAHKLEELRPLYASTGSAIPSPRSFSASSCSLDMGPLSPLSLGSPSVMPPPTSTPPLTPSGASSPMGGAMWPSGGGVPTLQMPRSRLKTASSARDIDLDIDLIGLENHLRMQQLMMDEMSGFSSPSGWKNPMPNSPSFAVSLGDQAREPNRLVGVKPTNLEDIFGSHDPSILPQLQSPTGIRACQNANLHLRSYCSSLSNSNVMGSPSRNDPSGAAASTMALNPRLAAFSKRSQSFIERSVVNRHPELSSPVSAATKPCAFSNWGSPDGKLDWTIHGEELNKLRKSASFGFRSGSNNTRMPENVDEPDVSWVHSIVKDPPAESGQFIFEEQQQKKIQCHPNNGSDVVSAWMEQFNMEQEQMSVGNFSKKFPIVFSQRHFIEHLPALFLLLAQNLPRRHLFSPIFLQFPSLLQFRETHFSHPSSGFKLLASFKAEHQEFIGLQHEKTRNLPKRQGGSHPPMNPLHPIAFPEAFRGIHGSASRERAGG 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2167 800 Gene3D - 30 184 IPR036770 -
Sto9g2167 800 MobiDBLite consensus disorder prediction 1 20 - -
Sto9g2167 800 Gene3D - 262 324 - -
Sto9g2167 800 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Sto9g2167 800 PANTHER UNKEMPT FAMILY MEMBER 20 675 IPR045234 -
Sto9g2167 800 SMART ANK_2a 77 107 IPR002110 GO:0005515
Sto9g2167 800 SMART ANK_2a 112 147 IPR002110 GO:0005515
Sto9g2167 800 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 20 675 - -
Sto9g2167 800 SMART c3hfinal6 296 319 IPR000571 GO:0046872
Sto9g2167 800 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Sto9g2167 800 MobiDBLite consensus disorder prediction 357 372 - -
Sto9g2167 800 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 286 IPR000571 GO:0046872
Sto9g2167 800 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Sto9g2167 800 Pfam Ankyrin repeats (many copies) 78 136 IPR002110 GO:0005515
Sto9g2167 800 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Sto9g2167 800 SUPERFAMILY Ankyrin repeat 35 156 IPR036770 -
Sto9g2167 800 MobiDBLite consensus disorder prediction 355 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2167 Sto-Chr9 25373482 25379168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2167 27 672 C2H2 Transcription Factor Family AT5G12850 37.131 1.03e-136 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto9g2167 Ank_4 9e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2167 - - aprc:113846970 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2167 9 25373482 25379168 Sto9g2167 9 25373482 25379168 ECH